Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq80 455 4e-123 seq478 105 8e-18 seq332 87.8 2e-12 >seq80 Length=2229659 Score = 455 bits (504), Expect = 4e-123 Identities = 1286/1969 (65%), Gaps = 11/1969 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | || || | | | ||||| ||||| || |||| | || Sbjct 1867680 CTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCT 1867739 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || || || || || || | || || || || || | || || Sbjct 1867740 CTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCT 1867799 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 1867800 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1867859 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 ||| || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 1867860 AGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 1867919 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || |||| |||| Sbjct 1867920 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTA 1867979 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 || || | || | ||| || || ||| | || || ||||| || || || | Sbjct 1867980 CTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGC 1868039 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || || || || |||||||| | || |||| || ||||| || || |||| | || Sbjct 1868040 GGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTT 1868099 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || || || || |||| || || || ||| | | || || ||||| || || Sbjct 1868100 GAGCAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAA 1868159 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 ||||| || || || || || || || || | ||| || || | || ||||| || | Sbjct 1868160 GCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGAC 1868219 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842 || || || || || || || || || || || ||| | || ||||||||| |||| Sbjct 1868220 CGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGA 1868279 Query 62843 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGA 62899 |||||| || ||| | || ||| | || ||||||| | || | || Sbjct 1868280 TGCCAGTTTTTTGAAGTCATAAGTCCGCTCTGGCGTGACGTACATGTTGAGAGCGATGGA 1868339 Query 62900 TGCCAGATTACAAACGGCTACCTCAT-TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 |||||||||||||| || ||||| | | | | | || | | | ||| ||||| | Sbjct 1868340 GGCCAGATTACAAACCGCCACCTCGTCTTGGCTG-GTGTACTCCACGACCTCCGTGCACA 1868398 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 | || || |||||||| || || | || || ||||| ||||| |||| ||||| || | Sbjct 1868399 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTT 1868458 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 63077 | || || ||| | || || || ||||| |||| || || || || || | ||| | | Sbjct 1868459 TGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCT 1868518 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137 || ||||||| | | || |||| || | |||||| || || || | | Sbjct 1868519 GCT-GAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA-AAGCTT 1868576 Query 63138 -TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 || ||||| || ||||| | ||| | || ||||| || || |||||||||| || Sbjct 1868577 CTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGA 1868636 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| ||| || || |||||| ||||| || || || || ||||| || || || Sbjct 1868637 CCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAA 1868696 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 1868697 GAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAA 1868756 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | || | |||||||| |||| ||| || || | |||| |||| |||||| || || Sbjct 1868757 CACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCGCC 1868816 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||||| || Sbjct 1868817 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGA 1868876 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | || ||||| |||| ||| ||||| || | || | || || | | | || Sbjct 1868877 GTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCC 1868936 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || ||| || || | ||||| | || | ||||| || || ||||| Sbjct 1868937 GATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTC 1868996 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 ||||| || || ||||| || || || ||||| |||| || | || | || || Sbjct 1868997 GATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTCCC 1869056 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || || || | ||| || || ||||| || ||||| || || || || || |||||||| Sbjct 1869057 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGT 1869116 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||| || || | ||| || ||| || || || || | || | ||| | |||||| Sbjct 1869117 CTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATGTG 1869176 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | || | | |||| ||| | ||| || ||||| |||| ||| || Sbjct 1869177 CTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTCTT 1869236 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || ||||| ||||||| || || ||||| ||||| || || |||||||||| || Sbjct 1869237 GAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGAGGCGGTC 1869296 Query 63857 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATT 63916 ||| | | || || || | || | | | || || || || || | || Sbjct 1869297 CTTGTTCTCCAGGACGATGTCGAGCGTCTTCTTGGCGATCATGGGCGAGTGGCGCTTGTT 1869356 Query 63917 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63976 ||| || ||||||||| | | || |||||||| || || || | ||| || || || Sbjct 1869357 CAGAGGGTTGACATAGTTGTACAGGTCTTCCATCACGTCGCTGAACATTTTCTTGGTCTC 1869416 Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64036 |||||| || ||||| ||||| || || ||||| || ||||| || || || |||| || Sbjct 1869417 CTTGTGCAGGTTTGAGACGGCGATCCTTGCGGCGAGGATGGCGTAGTCGGGGTGTTTGGT 1869476 Query 64037 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 || ||||| || || ||||| ||||| ||||| | || ||||| || || || | Sbjct 1869477 CGTCAGCGTGGCGGCGATCTCGGCCGCCAGCGTGTCGAGCTCCACCGTGGTGACACCGCT 1869536 Query 64097 ATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAA 64156 || | || || || |||||||| | || | | || || | | ||| | ||| | Sbjct 1869537 GTACAAACCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAATCAGAGTTCAG 1869596 Query 64157 GCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204 || || || || |||| || || || ||||||||||| |||||||| Sbjct 1869597 GCTGTAGCA-AAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 1869644 >seq478 Length=201109 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 33446 C 33446 | Sbjct 176058 C 176058 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| ||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 33446 C 33446 | Sbjct 188488 C 188488 >seq332 Length=374033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | || || || ||||| || ||||| || || || || | |||| Sbjct 72332 GTGCCTGCGTTGAACAGTGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAATTG 72391 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||||||||||| || || || | || |||||| || |||| || | ||| | | Sbjct 72392 TAGGTCTCAATAGCTGCATCAATGTCTCTTTTATGAATCCCGACTGACACTCTCATCAGC 72451 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||| ||| Sbjct 72452 ATGTGCTGGGGTCTCTCA 72469 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 62597 CTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCT 62655 ||||| |||| || ||||| || ||||| | ||| |||| || ||||| || ||||||| Sbjct 70382 CTTCTGCAGCCAGCTCACAGCTGGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAGATCT 70441 Query 62656 TCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62715 | || || || |||||| |||| |||||||||||| | || ||||| || | Sbjct 70442 GAATGTTGAGCAACTGGGCTTCCGGGCTTTCAAATGGATAACGCATCAGGATAAAAGCAT 70501 Query 62716 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62775 | || | || || || || || || || || | || | ||| ||||| ||||||| | Sbjct 70502 CAGCCAGACCCTGGACGCCGATTCCAATTGGCCGGTGGCGCTTGTTAGACCTTTCAGCCT 70561 Query 62776 C 62776 | Sbjct 70562 C 70562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || |||| ||| || || || ||||| || || || ||||| || | || || || ||| Sbjct 73033 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTGGACACGGCGATCCGAGCAGCCAGGATG 73092 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 || || || ||||||| || || ||||| || | || || ||||||||||||| Sbjct 73093 GCGTAGTCTGGATGTTTGGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCAGC 73152 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || |||||| | || | || || || |||||||| Sbjct 73153 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 73196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923271040680