Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq80 203 8e-47 >seq80 Length=2229659 Score = 203 bits (224), Expect = 8e-47 Identities = 577/871 (66%), Gaps = 22/871 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||| | || | |||| ||||| | |||| | || Sbjct 1869188 GAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACGGACATCGAC 1869129 Query 363508 GCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 || || || || || || || || || || | ||| ||||| |||||| | || | Sbjct 1869128 GCGGCCATCGAGACGTACAACCTGCTGTCAGAGAA-GTGG-TTCACCCACGCCTCCCCGA 1869071 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | ||| || || || |||||| |||| ||||| || || |||| Sbjct 1869070 CCCTCTTCAACGCCGGGACCAACCGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGA 1869011 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 | ||||| ||||||||| || | ||||| || ||| | || || || |||||||| Sbjct 1869010 AAGACGACAGCATCGAGGGCATTTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAAT 1868951 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 || ||||| || || || || || | | | ||| || ||||| || Sbjct 1868950 CCGCTGGCGGCATCGGCGTCGCGGTCAGCTGCATCAGAGCAACCGGGAGCTACATCGCCG 1868891 Query 363746 GCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 |||| | |||| ||||||| ||| |||| |||||||| | || | |||| ||||| Sbjct 1868890 GCACCAACGGGA-ACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAACACTGCT 1868832 Query 363805 AGGTACGTCGACCAGGGTGG-AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | ||||| |||||||| || | ||| || || || || || ||||| || ||||| Sbjct 1868831 CGCTACGTTGACCAGGGCGGCAACAAAAGGCCC-GGAGCCTTCGCGATGTACCTGGAGCC 1868773 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || ||| | ||||| || || ||||| ||| ||||||||||||||||| Sbjct 1868772 GTGGCACTTCGACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGGAAAAGAGGAGCA 1868713 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 | | || | || || ||||| || || ||| | | |||| || |||||||| ||||| Sbjct 1868712 GAGAGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGA 1868653 Query 363984 G-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | ||| ||| | ||||| || | || || |||| ||||| || || ||| | Sbjct 1868652 GAGCAACCAAG-ACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGACGAGTGCT 1868594 Query 364043 GGGGTGACGACTAT--GTTGCTCTATACGAAA----AGTATGAATCGGAGGGAAAGGCTC 364096 |||| || || | | | ||| || |||| | || | | | |||||| | || Sbjct 1868593 GGGGGGAGGAGTTTGAGAAGCTTTACACGACATACGAG-AAGGAGGGGAGGGTGAAGCGG 1868535 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 || | || || ||| |||| |||| |||||||| || ||||||| || || | Sbjct 1868534 GT-GGTGAA----GGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAACCG 1868480 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 |||| || || ||| | |||||||| |||||||| | ||| ||| |||||| |||| | Sbjct 1868479 GAACGCCGTACATGCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAACCTGG 1868420 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || || |||||||| || || ||| | | || |||||| | |||||| Sbjct 1868419 GCACCATCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAAGACGAGG 1868360 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || ||||| || || || ||||| || Sbjct 1868359 TGGCGGTTTGTAATCTGGCCTCCATCGCTCT 1868329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303302283303086