Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq80 248 8e-61 seq332 109 5e-19 seq23 96.9 3e-15 >seq80 Length=2229659 Score = 248 bits (274), Expect = 8e-61 Identities = 975/1511 (65%), Gaps = 48/1511 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| |||| | || | || || | ||| ||| ||| Sbjct 1867768 TTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 1867827 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || || || | || |||||||| ||||| | Sbjct 1867828 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGC 1867887 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || ||| | ||||| ||| ||| ||||| Sbjct 1867888 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1867947 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||||| || | ||||||||||||||||| | |||| |||| ||||| | Sbjct 1867948 AGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAG 1868007 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| | | ||| ||| || | | || |||||||| ||||||||||| | Sbjct 1868008 CCTTCGTACGTCTCGTAGGGGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGG 1868065 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || | || || ||||| || || ||||||||||| ||| || ||| ||| Sbjct 1868066 CGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGA 1868125 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| || | || || || || | || || | ||| | || || |||| Sbjct 1868126 ACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCC 1868185 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| ||| | ||| ||| | ||| | | |||| || || Sbjct 1868186 TGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTT-GATT----TCAAT 1868240 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCA 145588 || || |||| |||| ||| | ||| || || | |||| | |||| |||||| Sbjct 1868241 GATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGCC--AGTTTTTTGAAGTCA 1868298 Query 145589 AA---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 | ||| ||| ||| ||| | |||| ||||| || |||| ||||||| Sbjct 1868299 TAAGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGAGCGATGGAGGCCAGATTACAA 1868352 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || ||| ||| || | | |||| | |||| ||| | ||||| ||||| || ||| Sbjct 1868353 ACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTG 1868412 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| ||||| || |||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 1868413 ATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTAC 1868472 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCA 145823 || || || ||| ||||| ||| | ||| || ||| | ||| || || Sbjct 1868473 GGCGTTCCGGTTTCCGTCTGCGACTCGATGAT--GGCGTACCAAAGCTGCTGAGCCTTCA 1868530 Query 145824 CCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAAC 145883 || | ||| | ||||| | |||||| || |||| |||| ||||||| | | Sbjct 1868531 CCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCC 1868590 Query 145884 CGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGG 145943 | |||| ||| || |||||||||| || |||||||||||| ||||| | |||| Sbjct 1868591 CCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGC 1868650 Query 145944 CGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGC 146001 | || |||| ||| |||| || || | |||||| ||||| | | ||| | || | Sbjct 1868651 TCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTC 1868710 Query 146002 TTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTG 146061 | ||| ||||| ||| |||| ||||| | || | | | | ||| ||| Sbjct 1868711 TCTGC--TCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTG 1868768 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTC----CTTTTCGTTTGCCACCCTGGTCCACGT 146117 |||||| || | || | |||| ||||| | ||| | ||||| |||||||| |||| Sbjct 1868769 CCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG-TTGCCGCCCTGGTCAACGT 1868827 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||||||| | || | || |||||| | | ||| | | ||||| | Sbjct 1868828 AGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGG 1868887 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | || | | ||| | | | ||| || ||||||| ||||| Sbjct 1868888 TGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAG 1868947 Query 146238 CGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGC 146297 || | ||||| || |||||| | || || ||||| ||||| || ||||| ||| Sbjct 1868948 CGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGT 1869007 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAGAA 146355 | ||| ||||||| ||||| | ||| ||| | | ||| ||||| || ||| Sbjct 1869008 CTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC--CGGTTGGTCCCGGCGTTGAA 1869065 Query 146356 CAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 | |||||| ||||| || || || || || | || || ||||| ||||| | Sbjct 1869066 GAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTACGTCTCGATGG 1869124 Query 146415 CGTCTTGAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 | | | |||| |||| || || || || | | || | |||||||||||| || || Sbjct 1869125 CCGCGTCGATGTCCGTC-CCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGG 1869183 Query 146474 CGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCG 146533 ||||| ||||| | || | | | | || |||| | |||||| || ||| | || Sbjct 1869184 CGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCA 1869243 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 1869244 AAGAAGTTGTA 1869254 >seq332 Length=374033 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| | || | ||||| |||||| |||||||||| ||||| |||||||| | Sbjct 70922 TGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGT 70981 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 70982 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGCG 71041 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 71042 ACTCGATGAT 71051 >seq23 Length=4589928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | || | ||| || || || || |||||||| ||| | Sbjct 3279580 CCCCCCCTCAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 3279521 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 3279520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3279461 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 3279460 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3279401 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 3279400 TCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 3279353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 |||||| || | || | ||| |||||||| || |||||||| || || |||||| Sbjct 3277377 ACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 3277318 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||||||||| || |||| | | ||||||||| || ||||| || || || Sbjct 3277317 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 3277258 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | ||| | || || ||| ||| | || | ||| | Sbjct 3277257 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 3277198 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || || || || || || || || ||||||||| Sbjct 3277197 GGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 3277161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | ||| | ||| || || || || ||||| || || Sbjct 3279353 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGA 3279294 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3279293 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3279234 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || || | | || | Sbjct 3279233 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCAC 3279174 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || ||||| || || ||||||||| Sbjct 3279173 CTCAAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATG 3279125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994668808320