Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 >seq23 Length=4589928 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || || |||||||| || ||||||||||| | || ||| | | || Sbjct 3277374 CAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 3277315 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 3277314 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3277255 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 3277254 CTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3277197 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || || |||||||| |||||||| ||| Sbjct 3277196 GTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATGTTG 3277158 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| || || ||||| || || || ||||||||||||| Sbjct 3279579 CCCCCCTC--AGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 3279522 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 3279521 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3279462 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | ||||| | ||||||| Sbjct 3279461 GATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCC 3279404 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || |||||||| |||||||| Sbjct 3279403 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| || || || ||||| ||||| | || ||| | | || Sbjct 3279338 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATC 3279279 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 3279278 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3279219 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | || ||| || | ||||||| Sbjct 3279218 CTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATG 3279161 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || || ||||||||||| |||||||| || Sbjct 3279160 GTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATGTT 3279123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405072828568270