Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 125 5e-24 seq308 122 6e-23 seq2211 100 2e-16 seq213 100 2e-16 >seq10 Length=6656597 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | |||||| || ||||| ||||||||||| ||||||||| |||||||| Sbjct 6268032 ACCCGACCAAGTTTTTCGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 6268091 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | ||||||||||||| | || || || | Sbjct 6268092 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGCTGCAGGACATGCTGGATGGAT 6268151 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 6268152 TCATCAGAAAATTTGTGCTGTGTACCGAGTGTGACAACCCTGAAACTGACCT 6268203 >seq308 Length=414302 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||| | Sbjct 2766 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCAT 2707 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2706 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2672 >seq2211 Length=10280 Score = 100 bits (110), Expect = 2e-16 Identities = 75/88 (85%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||| ||||||||||||||||||||| || ||||| || |||||| || |||| Sbjct 5561 TTCCCCCGGCTGTGGTTTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCTTTCATCCA 5620 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 5621 TTCATGCGCGTCACTAATTAGATGACGA 5648 >seq213 Length=676571 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| | |||||||| |||||||||||||| || ||||| || |||||||| Sbjct 238186 AAGCCCATCCCCTTGGCCATGGTTTCGCTAGATTTGAGGTAGGGACAGTGGGAATCTCGT 238245 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 238246 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 238280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934655494663