Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq80 118 9e-22 seq23 116 3e-21 >seq80 Length=2229659 Score = 118 bits (130), Expect = 9e-22 Identities = 457/702 (65%), Gaps = 17/702 (2%) Strand=Plus/Plus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||||| ||| || || || |||| || | ||||||| || | || | | Sbjct 1868335 ATGGAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTG 1868394 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 |||| || || || |||||||||| | || ||||| || ||| ||||||| || Sbjct 1868395 CACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCG 1868454 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC 129876 |||||||| | |||||||||||| || ||||| |||| |||| |||| | | | Sbjct 1868455 TCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGG--CGTACC 1868512 Query 129877 AAGTCTC--GAGCCTTGATCTGTCT-TACAAATTTGCCACATTTCTCGTATGCCACATAC 129933 || || ||||||| | | | | || | || | || |||||||| | || Sbjct 1868513 AAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTT-CTCGTATGTCGTGTAA 1868571 Query 129934 AGTTGTTCAAATTC-TGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACAT 129992 || | ||||| || | || | || ||||||| || | || |||||||| Sbjct 1868572 AGCTTCTCAAACTCCTCCCCCCAGCACTC-GTCGAGCCCGGGACACTCGTCGGGACACAT 1868630 Query 129993 CAAACTCCACATTCCATCCGCT-TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGG 130051 || | ||| | | ||| || ||||| ||||| |||| ||||| | |||||||| Sbjct 1868631 CAGAGACCAGTCTTGGTT-GCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGG 1868689 Query 130052 CGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGA 130111 |||| || | || | ||| | ||||| ||| |||| ||||| || |||| Sbjct 1868690 CGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGA 1868749 Query 130112 AATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT---T 130168 | || | | |||| ||||||||| || | || || || | || || || | | Sbjct 1868750 ATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGT 1868809 Query 130169 TGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATC 130228 |||| || |||||||||| ||| | | |||||||| |||| || ||| | |||| | Sbjct 1868810 TGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACC 1868869 Query 130229 CGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGC-CCGAACGTTATGAACG 130287 |||| | | ||||| |||| | ||| | || || || | || ||| || Sbjct 1868870 CGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCG 1868929 Query 130288 CTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATA 130346 | | || |||||||| | |||| || || | ||||| | || | || || || || Sbjct 1868930 C-GACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACT-GCTTCAGGGTGTCGTA 1868987 Query 130347 AATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388 |||||| |||| ||||| ||||| ||| || ||||| || Sbjct 1868988 AATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCA 1869029 >seq23 Length=4589928 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||||| ||||| || ||||| ||||| | || || || || |||| ||||| ||||| Sbjct 3279119 TGTAAACATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTGGA 3279178 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | | || ||| | || | | || || || || ||||||||||| || || || Sbjct 3279179 ACCAAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC 3279238 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || ||||||||||| ||| | || ||| ||||||| | || || Sbjct 3279239 TGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGA 3279298 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || |||||||||||| | ||| | || |||| Sbjct 3279299 CTATAACATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCG 3279340 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| ||||| ||| Sbjct 3279354 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAGT 3279413 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || || || || || || Sbjct 3279414 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 3279473 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 3279474 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 3279533 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 3279534 ATCCAGAAAGAATCCACC 3279551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||| || || ||||| || Sbjct 3277159 AACATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 3277218 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | || || || || ||||||||||| || || || || Sbjct 3277219 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 3277278 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| ||| | || ||| ||||||| | || || ||| Sbjct 3277279 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 3277338 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 3277339 AACATCCAGAAGGAGTCAACC 3277359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712280268245