Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq80 98.7 2e-15 seq158 91.5 3e-13 seq81 91.5 3e-13 seq54 91.5 3e-13 seq32 91.5 3e-13 seq14 91.5 3e-13 seq3 89.7 1e-12 seq64 87.8 4e-12 seq18 86.0 1e-11 >seq80 Length=2229659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 223/328 (68%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 ||||||||| || | ||| | || ||||| |||| ||||||||||||| || ||| Sbjct 1868373 GGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1868432 Query 293979 CATGTTCTTGGCATTGACACT-GTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCT 294037 || |||| ||| ||| |||||||| ||| | || ||| | || ||||| ||| Sbjct 1868433 ATTGCTCTTCCTGTTG-CACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCT 1868491 Query 294038 GAGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCT 294097 | | || |||| || ||| | | ||||||||||||| ||||| || |||||| Sbjct 1868492 GCGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCT 1868551 Query 294098 CAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAG 294157 | ||| || | |||||||||| || | |||| || | || || || | Sbjct 1868552 CCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGG 1868611 Query 294158 GGCACTCGTGAGGGTCA-AGTAGAGACCA--CTGGGCATCAGTCTCCACGCGCTTCATGA 294214 | ||||||| ||| || | |||||||| || || | ||||||| |||||||||| Sbjct 1868612 GACACTCGT-CGGGACACATCAGAGACCAGTCTTGG--TTGCTCTCCACTCGCTTCATGA 1868668 Query 294215 ATAGATCATTGACCCACATTGCGTAAAA 294242 | || || || ||||| ||||| || Sbjct 1868669 ACAGGTCGGGGATCCACAGGGCGTAGAA 1868696 >seq158 Length=1023182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1021767 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1021826 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1021827 CCCCACGTTGGGC 1021839 >seq81 Length=2204718 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1983144 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1983203 Query 142562 GCCCCACATCGGG 142574 ||||||| | ||| Sbjct 1983204 GCCCCACGTTGGG 1983216 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1990769 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1990828 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1990829 CCCCACGTTGGGC 1990841 >seq54 Length=3035547 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 846394 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 846335 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 846334 CCCCACGTTGGGC 846322 >seq32 Length=4117031 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1608942 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1608883 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1608882 CCCCACGTTGGGC 1608870 >seq14 Length=5985938 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2968956 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2969015 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2969016 CCCCACGTTGGGC 2969028 >seq3 Length=10095097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9937254 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9937313 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9937314 CCCACGTTGGGC 9937325 >seq64 Length=2526535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 2417372 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 2417314 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 2417313 TCGAGTCCCGGCAGAGA 2417297 >seq18 Length=4989356 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 822749 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 822808 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 822809 TCCCGGCAGAGA 822820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027796331174393