Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq23 178 2e-39 seq478 93.3 8e-14 seq80 93.3 8e-14 seq120 87.8 3e-12 >seq23 Length=4589928 Score = 178 bits (196), Expect = 2e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || | || |||| |||| ||| || ||||| ||||| |||||||| Sbjct 3279589 TTTTACTGCCCCCCCCTCAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTG 3279530 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | |||||||| | |||||| ||||| || || || || || ||| Sbjct 3279529 TAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG 3279470 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || |||||||||||||| || ||||| ||||| ||| |||||||||||| Sbjct 3279469 TCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTG 3279410 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 3279409 GGCTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Score = 168 bits (186), Expect = 1e-36 Identities = 163/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| ||||||||||| || || || || | |||||||| | Sbjct 3279333 CAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATCTTCCA 3279274 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || ||||| || || ||||| |||||||| || | Sbjct 3279273 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 3279214 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| |||||||||||| || ||| || || | ||||||||| || | Sbjct 3279213 TCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATGGTCTTCC 3279154 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| ||||| || |||||||| Sbjct 3279153 CAGTGAGGGTTTTGACAAAGATCTGCAT 3279126 Score = 165 bits (182), Expect = 2e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || | || |||| |||| ||| || || ||||| || |||||||| Sbjct 3277397 TTTTACTGCCCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTG 3277338 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | |||||||| | |||||| || || || || || || || ||| Sbjct 3277337 TAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 3277278 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| |||||||| || ||||| ||||| ||| |||||||||||| Sbjct 3277277 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTG 3277218 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| ||||||||| || || |||||||||||||| || |||||||| Sbjct 3277217 GGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3277162 >seq478 Length=201109 Score = 93.3 bits (102), Expect = 8e-14 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 9892 TTTAGAAGTCTGCGTCAATTGCAAACACGTTG-TCGTCGG--CATTCATGACGCCCGCCT 9948 || ||||||||||||| | | || |||| |||| || | |||||| ||| | Sbjct 177133 TTCAGAAGTCTGCGTCCAGTCTGAAGGAGTTGCTCGTGGGACCCGACATGACCCCCATCC 177074 Query 9949 TCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCT 10008 ||||||||||| ||||| ||| |||||||||| ||| ||||| || || ||| || Sbjct 177073 TCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCT 177014 Query 10009 CCATGAAGTCAAAGGGGTTCTCGGC 10033 |||||||||| ||||||||||| || Sbjct 177013 CCATGAAGTCGAAGGGGTTCTCCGC 176989 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC-GTCGG--CATTCATGACGCCCGCCTTCT 9951 ||||||||||||| | || ||||||| || || | |||||| ||| | ||| Sbjct 187554 AGAAGTCTGCGTCCAGCCTGAAGGCGTTGTCTGTGGGACCCGACATGACCCCCATCCTCT 187613 Query 9952 GGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCA 10011 |||||||| ||||| ||| |||||||||| ||| ||||| || || ||| ||||| Sbjct 187614 GGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCA 187673 Query 10012 TGAAGTCAAAGGGGTTCTCGGC 10033 ||||||| ||||||||||| || Sbjct 187674 TGAAGTCGAAGGGGTTCTCCGC 187695 >seq80 Length=2229659 Score = 93.3 bits (102), Expect = 8e-14 Identities = 321/494 (65%), Gaps = 9/494 (2%) Strand=Plus/Plus Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784 ||||| || || | ||| | || || ||||||| | |||||||||| || ||| Sbjct 1868374 GTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGA 1868433 Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843 || ||||| ||| ||||| ||| |||| ||||| ||| ||| | || || || |||| Sbjct 1868434 TTGCTCTTCCTGTTGCACGC-GTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTG 1868492 Query 31844 CGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTC 31903 || ||| || || | ||| | | | || || || || |||| | | |||||| Sbjct 1868493 CGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTC 1868552 Query 31904 GGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGG 31963 |||||| || || | ||| |||||| || || ||| || ||||| Sbjct 1868553 CTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGG 1868612 Query 31964 ACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAG 32023 |||||| | ||| | || ||||| | | | ||| ||||||||||||||||| Sbjct 1868613 ACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAG 1868672 Query 32024 GTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTT 32083 |||| | ||||| ||||| || || | |||||| | || ||| | ||| ||| Sbjct 1868673 GTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTT 1868732 Query 32084 ACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGA 32142 | || ||| |||||| || | | |||| ||| ||||| ||||||| |||| Sbjct 1868733 -CTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGA 1868791 Query 32143 AAGATC----CCTTGCGGCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACC 32198 | | || |||| | | || ||||||| |||| || || ||| ||| || Sbjct 1868792 AGGCTCCGGGCCTTTTGTTG-CCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACT 1868850 Query 32199 TTCAGCATGGGTAC 32212 |||||||||| || Sbjct 1868851 CTCAGCATGGGGAC 1868864 >seq120 Length=1358396 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 |||||||||||||| |||||||| |||||| ||||||||| || ||||||||| || Sbjct 127808 GGGCTCTCGTGGTTAAAGAGGATCCCGTTGACAGCGAACATGTTGTAGGCCTCACGGAAG 127867 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACT 268498 ||||| || ||||||| || ||| ||| ||| || Sbjct 127868 TTCACCACAATCCAGTAGGCGTACAGCTTAGCAGCT 127903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921586998179560