Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq80 590 1e-163 seq478 114 2e-20 seq332 109 1e-18 seq3 96.9 7e-15 >seq80 Length=2229659 Score = 590 bits (654), Expect = 1e-163 Identities = 1064/1528 (70%), Gaps = 54/1528 (4%) Strand=Plus/Plus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 |||||| ||| || | ||| ||||| || || || || | ||| ||||| |||||| Sbjct 1867758 CAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCT 1867817 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | || | ||||||| ||| |||||||||| ||||| || ||| ||| || ||||| Sbjct 1867818 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCAT 1867877 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTT 244260 |||| || |||||| ||||||||||||||||| | ||| | ||| || Sbjct 1867878 CGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT 1867937 Query 244261 CCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAG 244320 ||||||||||| | ||| ||| || | || ||||||||| ||||||| | Sbjct 1867938 CCAGTCCCACAGGTCCG--------TCG-GTGTCTTGCTCCACATGTCGTACTGCAGGAC 1867988 Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCT 244379 ||| ||||||||||| ||| ||||| ||| |||||| ||| || | | |||||||| Sbjct 1867989 GCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCT 1868047 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 |||||| | || ||||||||||||||||||||||| || ||| |||| | | || Sbjct 1868048 CGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGA-GCAGC 1868106 Query 244440 GG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGC 244498 | |||| | || ||| ||| | ||||| |||||| |||| |||| || || Sbjct 1868107 TGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGG 1868166 Query 244499 ACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAA 244558 || ||||| || || || ||||| ||||||||||| | | ||||||||| || ||||| Sbjct 1868167 ACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAG 1868226 Query 244559 AAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGC 244618 ||||| || || | |||||| ||||| ||| | | || | || || | Sbjct 1868227 TAGTTGATTTCAATGATCTTGTTCAGGTTTT------TCACG---ATTACTTTGGTCA-C 1868276 Query 244619 AGCTGAAAGTCGTACTCGTAGGGATCC-TCGGCGATGGTGATCCTCACAAACTCGTTGAG 244677 || || ||| | | | || || || || ||| | | || || |||||| Sbjct 1868277 AGATGCCAGTTTT--TTGAAGTCATAAGTCCGCTCTGGCG----TGACGTACATGTTGAG 1868330 Query 244678 GGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTC 244737 |||| | |||||| || || || |||||||| || | ||||||||| || | ||| Sbjct 1868331 AGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTC 1868390 Query 244738 GGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCA 244797 ||||| ||||| |||||||||||||||||||||| ||| |||||| ||| |||||| Sbjct 1868391 CGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCA 1868450 Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 ||||| |||||||||||| | ||| ||||| || ||| | ||| || | || Sbjct 1868451 CGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTA 1868510 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 ||| || | | |||||| ||| || || | ||||| |||||| ||||| Sbjct 1868511 CCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA 1868570 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACA 244976 || ||| ||||| |||||| |||||| || ||||| ||| || |||| |||| Sbjct 1868571 AAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACAC-TCGTCGGGACACA 1868629 Query 244977 TGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036 | ||| ||| || | | || || | || |||||| |||||||||||||| |||| Sbjct 1868630 TCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGG 1868689 Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAA 245096 | | |||||||||||||| |||||||| || || ||||||||| ||||||||| | Sbjct 1868690 CGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGA 1868749 Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 | ||||| ||||||| |||||| ||||||| ||| | |||| ||| ||||||| |||| Sbjct 1868750 ATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGT 1868809 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACT 245212 |||| ||||||| || | | ||||| |||| | | | ||| | || || Sbjct 1868810 TGCCGCCCTGGT----CAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACC 1868865 Query 245213 ATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC--TTGCCCCTGAGGTTGC 245270 | ||||| |||| ||||||||||| |||||| || ||| ||| | |||| | || Sbjct 1868866 AACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTA-GCTCCCGGTTG-CTCTGATGCAGC 1868923 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| | | ||| | ||||| ||| ||||| ||||||||||| ||| | ||||| Sbjct 1868924 TGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGT 1868983 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| |||||||| |||||| |||||| |||||| ||||||||| | Sbjct 1868984 CGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 1869043 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAG 245449 || | | | | | |||||| || || ||| ||||||||| || | | ||| || Sbjct 1869044 GCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCA-CTTCTCTGAC 1869102 Query 245450 AGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATCTGCAGGGCGCA 245508 || | |||||||| || |||||||||| ||| ||||||||| | | Sbjct 1869103 AGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTC-CCGTGGATCCCAACCGACAC 1869161 Query 245509 CCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCT--CGGGTCCCTTGAGCATGTA 245565 ||||||||| ||||||| ||||| |||| | || | || || | |||| || Sbjct 1869162 CCTCATGAGCATGTGCTGCGGGCG-CTCG--GCCACCTTGCCGTTGACCCTCAGCAGATA 1869218 Query 245566 GGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||||||||| || ||||||||||||||| Sbjct 1869219 GGAGCGCTCCAGAGTCTTGAACCCAAAG 1869246 >seq478 Length=201109 Score = 114 bits (126), Expect = 2e-20 Identities = 103/127 (81%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | || || ||||| ||||||||||| || | |||||||||||||||| Sbjct 188493 TGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCT 188434 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||| ||||| ||||||||||| Sbjct 188433 GGCTGAAGAAGAGAGGCCT-GATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGA 188375 Query 42825 GACGAGG 42831 ||||||| Sbjct 188374 GACGAGG 188368 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | || || ||||| ||||||||||| || | ||||| ||||||||| Sbjct 176053 TGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCCATCTTCT 176112 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||| ||||| ||||||||||| Sbjct 176113 GGCTGAAGAAGAGAGGCCT-GATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGA 176171 Query 42825 GACGAGG 42831 ||||||| Sbjct 176172 GACGAGG 176178 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 176997 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 177056 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 177057 GGTCGGGGAGTACCAG 177072 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 187687 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 187628 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 187627 GGTCGGGGAGTACCAG 187612 >seq332 Length=374033 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| |||||| || || |||||| Sbjct 69943 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTACGCCTCGATC 70002 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || ||||| || | | ||||||| Sbjct 70003 GACTCATTGTTGCCCAGGATCTGAGCTGTGGAGGCTGTGGGCATCGGGGCTAACAGCAGA 70062 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 70063 CTGTTCCTCACACCGTGCCT 70082 Score = 100 bits (110), Expect = 5e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||| || ||||| || || ||| | |||||||||||||||| || || Sbjct 70921 GTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGG 70980 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||||||||||||||||||| | || ||| || || ||| Sbjct 70981 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGC 71040 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | || ||| || | | |||||| ||| ||| | ||| ||||||| Sbjct 71041 GACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCATCCGCCTGGCCCTGCCCTCC 71100 Query 244901 GCCTCGTA 244908 |||||| Sbjct 71101 TTCTCGTA 71108 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 |||||||||||||| | ||| ||||||| |||| ||| | ||| ||||||| Sbjct 70339 CCCTTGCTGACGGGACAGCCAGCGTAGGTTTCATAGGTGCCGACTT-CTGCAGCCAGCTC 70397 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| | || || || ||||||||||||||||| |||||| |||| | | | Sbjct 70398 ACAGCTGGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAGATCTGAATGTTGA-GCAACT 70456 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 || ||| | | | || |||| | ||||| || || | || ||||| ||||| | Sbjct 70457 GGGCTTCCGGGCTTTCAAATGGATAACGCATCAGGATAAAAGCATCAGCCAGACCCTGGA 70516 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||||| || || || | ||| |||||||| || Sbjct 70517 CGCCGATTCCAATTGGCCGGTGGCGCTTGTTAGA 70550 >seq3 Length=10095097 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||||||||||||||||||| | || || Sbjct 6542965 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCTTTTGCT 6543024 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| ||||| ||| ||| ||| || |||||||| || || | ||| || ||||| Sbjct 6543025 GCCATCTATTGGCTAAAGAAGAGAGGCCTC-ATGCCCGGCCTGACGTACTCCAATGAACT 6543083 Query 42815 CATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 6543084 GATTAGCAGGGATGAGG 6543100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944302925570480