Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq80 167 3e-36 seq478 91.5 2e-13 seq332 89.7 6e-13 >seq80 Length=2229659 Score = 167 bits (184), Expect = 3e-36 Identities = 886/1387 (64%), Gaps = 36/1387 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 1867807 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAC 1867866 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || || ||| Sbjct 1867867 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 1867926 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTG-TCTCCCCCTGCCACATATCAAACTGGAG 114120 || || | |||||| | | | | | | || || |||||| || |||| || Sbjct 1867927 TTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCT-CCACATGTCGTACTGCAG 1867985 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAA 114180 || || | | | || || || || | |||||||| ||||| | | |||| Sbjct 1867986 GACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAG 1868045 Query 114181 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 114240 ||| |||||||||| ||||| |||| || || |||||||| || | || | Sbjct 1868046 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAG 1868105 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 114300 || |||||| | || |||| | || ||| || || | || || | ||||| Sbjct 1868106 CTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTG 1868165 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGGAT 114359 ||| |||| |||||||| | || | | | || ||| | ||| || || || | Sbjct 1868166 GACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCG-GCTTCGGGGACCGGGT 1868224 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA- 114418 | | || | || || | | | || || ||||| || || || || | ||| Sbjct 1868225 AGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAG-ATGCC 1868283 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 || |||| | | ||| || | || |||| |||| ||| | || ||||| || Sbjct 1868284 AGTTTTTTGAAGTCATAAGTCCG---CTCTGGCGTGACGTACATGTTGAGAGCGATGGAG 1868340 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 ||||||||||| || | ||| || | |||||||| | | ||||| |||| Sbjct 1868341 GCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGG 1868400 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 || | ||| |||||||||| ||||| ||||| ||| |||| ||||| || ||| Sbjct 1868401 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTG 1868460 Query 114599 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 114657 || |||||||| ||||| || || ||||| || |||| || || || | ||| | | | Sbjct 1868461 TAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCTGC 1868520 Query 114658 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 | | || || || || | | |||||||| |||||| | ||||| || || Sbjct 1868521 TGAGCCTTCACCACCCGC-TTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTC 1868579 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 |||||| || ||| | ||| |||||| || || || || || | |||||||| Sbjct 1868580 AAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCA 1868639 Query 114778 ---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAA 114834 ||| | |||| || ||||||||||| ||||| |||||||| || || |||| Sbjct 1868640 GTCTTGGTTGCTCTCC---ACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAA 1868696 Query 114835 GAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 ||| |||| | | ||| || | ||| || || || ||||| || || | Sbjct 1868697 GAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTG-TTCTTCTTCAGCTCCAGGAATTCAA 1868755 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTACGACGACCA 114949 | || ||||||||| |||||||||| ||||| | | |||| | | || Sbjct 1868756 ACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTG-CCG 1868814 Query 114950 GCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCA 115009 |||||| || || | || ||| || | || | ||||| || | | || | Sbjct 1868815 CCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTC 1868874 Query 115010 GATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGC 115066 || | || || || || ||| | | || ||||||| || | || | | Sbjct 1868875 GAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTT-GCTCTGATGCAGC-TGACCGCG- 1868931 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 | || || || || || | || || || | ||||||| | | || || |||| || Sbjct 1868932 ACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATG 1868991 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC--TTG 115184 || ||||| ||| | || | |||| ||||||||||| |||| ||||||| ||| Sbjct 1868992 CCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTG 1869051 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 || || |||||||||||||| || | |||||| ||||| || | | |||| | Sbjct 1869052 --GTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGG 1869108 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 | ||| ||||| | | | ||| ||||| |||||| || || | ||| |||| ||| Sbjct 1869109 TTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATG 1869168 Query 115304 AACATGT 115310 | ||||| Sbjct 1869169 AGCATGT 1869175 >seq478 Length=201109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || ||| || ||||| ||||||||||||||||||||| ||||| | Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 176058 CCACCACACGCTC 176046 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | || ||||| ||||||||||||||||||||| ||||| | Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 188488 CCACCACACGCTC 188500 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| | | |||||||||| || |||||| |||| ||| || | | | |||||| Sbjct 70908 CTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATT--TGATGGTG 70965 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||| | || || ||| |||| || || |||||||| ||||||||||| ||| Sbjct 70966 CCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTC 71025 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 ||||| || || || |||| || || || | ||| Sbjct 71026 CCCGTTTCTGTCTGCGACTCGATGATGGCGTACCA 71060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330654154840