Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq96 98.7 1e-15 seq309 96.9 4e-15 seq146 91.5 2e-13 seq35 87.8 2e-12 seq158 86.0 7e-12 >seq96 Length=1850235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 56999 AAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 816513 AAAATGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 816454 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 816453 TCACCACTATACTAACGAGGA 816433 >seq309 Length=411200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 386380 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 386321 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 386320 ACTATACTAACGAGGA 386305 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 384484 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 384543 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 384544 TACTAACGAGGA 384555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | |||||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct 383447 CTCCCCGTCGGGAAATCGAACCCCGGTCTCCCGCGTGACAGGCAGCGATACTCACCACTA 383388 Query 57067 TACTACCGAGGA 57078 |||| |||||| Sbjct 383387 CACTAACGAGGA 383376 >seq146 Length=1105081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 84407 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 84348 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 84347 ATACTAACGAGGA 84335 >seq35 Length=3987237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1387687 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1387628 Query 57066 ATACTACCGAGGA-TTGA 57082 |||||| |||||| |||| Sbjct 1387627 ATACTAACGAGGAGTTGA 1387610 >seq158 Length=1023182 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1022409 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1022468 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1022469 TACTAACGAGGA 1022480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543191933838320