Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq80 262 4e-65 >seq80 Length=2229659 Score = 262 bits (290), Expect = 4e-65 Identities = 1041/1610 (65%), Gaps = 55/1610 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| ||||| ||||||||| || || || || | | | | |||| | Sbjct 1869254 TACAACTTCTTTGGGTTCAAGACTCTGGAGCGCTCCTATCTGCTGAGGGTCAACGGCAAG 1869195 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| ||| | || | | ||||| ||||| ||| Sbjct 1869194 GTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACGGAC 1869135 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCA 93889 || ||| |||| | | ||| || ||| | || ||| ||| ||| Sbjct 1869134 AT--CGAC------GCGGCCATCGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCC 1869083 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTT 93947 ||| |||||||||| |||||||| |||||| |||| |||||| |||| || || Sbjct 1869082 ACGCCTCCCCGACCCTCTTCAACGCCGGGACCAACCGG--CCACAGCTGTCCAGCTGCTT 1869025 Query 93948 CCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGC 94007 |||| | | | || | |||| |||| || |||| ||||| ||| ||| | || || Sbjct 1869024 CCTGCTCGCCATGAAAGACGACAGCATCGAGGGCATTTACGACACCCTGAAGCAGTGCGC 1868965 Query 94008 GACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGG 94067 ||| || |||| ||| || || ||||| || ||| | | | | || | || Sbjct 1868964 CCTCATTTCCAAATCCGCTGGCGGCATCGGCGTCGCGGTCAGCTGCATCAGAGCAACCGG 1868905 Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 ||||||| ||| ||||| || | ||| ||||| | ||||| ||||| | || | Sbjct 1868904 GAGCTACATCGCCGGCACCAACGGGAACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTA 1868845 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 ||||||| | || |||||||| |||||||| || | ||| || | |||||| | Sbjct 1868844 CAACAACACTGCTCGCTACGTTGACCAGGGCGGCAACAAAAGGCCCGGAGCCTTCGCGAT 1868785 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 || || ||||| |||||| |||||| | ||| | || ||| |||||| || Sbjct 1868784 GTACCTGGAGCCGTGGCACTTCGACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGG 1868725 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || || | |||| ||||| |||||||||||||| || ||| | || ||||| || || Sbjct 1868724 AAAAGAGGAGCAGAGAGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCAT 1868665 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 ||| || || |||| ||| | |||| ||| | |||||| | || |||||||| || Sbjct 1868664 GAAGCGAGTGGAGAGCAACCAAGACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCT 1868605 Query 94368 GTCCGA-CGTTTGTGGATCGCGTTT-TGAAGACTTGTATGCTCGTTACGAATCGCAGGGC 94425 ||| | | | || | |||| |||| ||| || | ||||| | |||| Sbjct 1868604 CGACGAGTGCTGGGGGGAGGAGTTTGAGAAG-CTT-TACACGACATACGAGAAGGAGGGG 1868547 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | || | | ||| || | ||| | |||| ||| | ||| | || ||| | Sbjct 1868546 AGGGTGAAGCGGGTGGTGAAGGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACG 1868487 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 || || || ||||| ||||| | | ||| ||| | |||| ||| ||| |||||| Sbjct 1868486 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAG 1868427 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || |||||| || || |||||||| ||| | || ||||| || | Sbjct 1868426 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAA 1868367 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | || || ||||| |||| ||||||| || || || | || || | ||| Sbjct 1868366 GACGAGGTGGCGGTTTGTAATCTGGCCTCCATC--GCTCTCAACAT--GTACGTCACGCC 1868311 Query 94666 -TACACGTCTACTG-CTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATG 94722 | | || || |||| | ||| | | | ||||| | ||| || Sbjct 1868310 AGAGCGGACTTATGACTTC-AAAAAACTG--GCATC-TGTGACC-------AAAGTAATC 1868262 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 || |||||||||| | | || || | |||| |||||| ||||| || || |||| Sbjct 1868261 GTGAAAAACCTGAACAAGATCATTGAAATCAACTACTACCCGGTCCCCGAAGCCGAGAGG 1868202 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| | || |||| || || ||||| ||||| || || || ||||| | | Sbjct 1868201 TCCAACAAGCGCCACAGGCCAATTGGAATCGGAGTCCAAGGCTTGGCAGACGCCTTCATC 1868142 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 |||||||| || | ||| ||| ||| | | || | | || || || Sbjct 1868141 TTGATGCGTTACCCGTTCGAAAGCCCCGAGGCGCAGCTGCTCAACATCCAGATGTTTGAG 1868082 Query 94903 AGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || |||| ||| | || | | | | | | ||||| | || ||| || Sbjct 1868081 ACCATCTACTACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCCGAGCTCGGCCC 1868026 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACA-GGGCATTTTTCAGTTCGACCTCTGGG 95020 |||| ||| | || || ||| | | || |||| | | |||| |||| | ||| Sbjct 1868025 CTACGAGACGTACGAAGGCTCCCCCGT-CAGCAGGGGCGTCCTGCAGTACGACATGTGGA 1867967 Query 95021 GTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAAC 95077 | || || ||| |||| |||| ||||||| || | | | || | ||||| Sbjct 1867966 GCAAGACACCGACGGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGA--TCGCCAAAC 1867910 Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| |||| ||| ||||| |||| || ||||||||||| ||||| || ||||||| Sbjct 1867909 ACGGCGTGAGGAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACTGCCCAGATCC 1867850 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||||||||||| |||| ||| |||| |||| | |||| | | |||| ||| Sbjct 1867849 TGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCT 1867790 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGT 95257 ||||||| |||| || ||||| ||||| || ||| ||||| ||| ||| Sbjct 1867789 CCGGGGAGTTCCAGATCGTCAACCCCCACCTGCTGAAAGACATGACGGAGAGGGGGCTGT 1867730 Query 95258 GGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 || | || || | |||||| | ||| | | |||||| ||| | ||| Sbjct 1867729 GGAGCGAGGAGATGAAGAACAAGCTGATCGCCAACAACGGATCCATTCAG 1867680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494704196445080