Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq80 288 1e-72 >seq80 Length=2229659 Score = 288 bits (318), Expect = 1e-72 Identities = 914/1402 (65%), Gaps = 40/1402 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 1867813 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTG 1867872 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| ||||| || || |||| || |||||| || | ||||||| | Sbjct 1867873 GGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 1867932 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| ||| ||||||| | |||||||||||||||| | || || Sbjct 1867933 AGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCC 1867992 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 | ||| |||| ||| | |||| |||| |||| || | |||||| ||||| Sbjct 1867993 CTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGCA 1868051 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || || || | ||||| | ||| Sbjct 1868052 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGC 1868111 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| ||| |||| |||| || | |||||||| |||| || |||| || Sbjct 1868112 CTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCC 1868171 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGAT 153492 || || || || | || || |||| | | ||| ||| | || |||| | Sbjct 1868172 GATTCCAATTGGCCTGTGGCGCTTGTTGGACCTC-TCGGCTTCGGGGACCGGGTAGTAGT 1868230 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || || || || ||||| ||||| ||| | ||||| || | | ||||| | Sbjct 1868231 TGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTT 1868290 Query 153553 CGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 ||| ||||| ||| || | || ||||| || || | || || || |||||| Sbjct 1868291 TGAAGTCATAAGTCCGCTCTGGCGTGACGTAC--ATG--TTGAGAGCGATGGAGGCCAGA 1868346 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 ||||| || ||| ||| || | | |||||| ||||| ||| | ||| ||||||||| Sbjct 1868347 TTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTG 1868406 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 || || ||| ||||| || ||||||||||| || | ||||||||||||||| ||||| Sbjct 1868407 CACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGC 1868466 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGT---CC 153785 |||||||| ||||| || |||| |||| ||| ||| | || | | || Sbjct 1868467 ATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCTGCTGAGCC 1868526 Query 153786 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCA 153845 | | | |||||||| | | ||||| |||||||| | ||| || |||| Sbjct 1868527 TTCAC---CACCCGCTTCACC---CTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCA 1868580 Query 153846 AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 153905 ||||| || || |||| ||| |||| |||||||||| | ||||||||||| ||||| Sbjct 1868581 AACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAG 1868640 Query 153906 ATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGG 153965 | || | | || || ||||||||| || || | ||| || ||||| | |||| Sbjct 1868641 TCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGG 1868700 Query 153966 TCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGA 154023 || | || | ||| ||||| ||| |||| ||||| | || | | | | Sbjct 1868701 TCCCTGGCTCTCTGC--TCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAACA 1868758 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCAC----CTTTACGCTTTCCGCCC 154079 |||| |||||| || || | ||| | || | ||| | | || | || |||||| Sbjct 1868759 CGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG-TTGCCGCCC 1868817 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || || |||| ||| | | |||||| | || | || |||||| ||| ||| | | | Sbjct 1868818 TGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGAG 1868877 Query 154140 GTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-----A 154194 | |||||||| ||| | ||| ||| || | ||||||| | | | Sbjct 1868878 TTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTC-----TGATGCAGCTGACCGCGA 1868932 Query 154195 CGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGC 154254 |||| |||||||| || | || || ||| ||||| | ||| || ||| |||| Sbjct 1868933 CGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGC 1868992 Query 154255 CGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCG 154314 | |||||||| ||||| | | |||||| ||| || ||| || || | | Sbjct 1868993 CCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGG 1869052 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGT 154374 | || || |||||||| || ||||| || ||| || | || || | || Sbjct 1869053 TCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 1869112 Query 154375 ACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCA 154434 |||| |||||||| | ||||| || ||||| || || | || || | |||||||| Sbjct 1869113 ACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCA 1869172 Query 154435 TGTGCTGCGGACGTTCGGCGAC 154456 |||||||||| || ||||| || Sbjct 1869173 TGTGCTGCGGGCGCTCGGCCAC 1869194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243337320560