Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq80 161 9e-35 seq23 93.3 4e-14 seq332 86.0 6e-12 >seq80 Length=2229659 Score = 161 bits (178), Expect = 9e-35 Identities = 618/945 (65%), Gaps = 38/945 (4%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| | ||| ||||| |||| ||| || | | || | |||||||||| | | Sbjct 1867766 GGTTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 1867825 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||| ||||||||||| || || ||||| || || | || || ||||| ||||| Sbjct 1867826 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCA 1867885 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---GTAGTTTGGACCAAT 146239 ||||| ||| |||||||||||| | ||||| ||| | || || ||| | Sbjct 1867886 GCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT---CCAGT 1867942 Query 146240 TCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACA 146299 ||||| | ||||| || | | | ||||||| |||| ||| | | | Sbjct 1867943 CCCACA---GGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGA 1867999 Query 146300 GGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGCT 146358 |||| ||||||| || || || ||| | || |||||| |||||||| || Sbjct 1868000 CGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGCAGCTCGCC 1868058 Query 146359 TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCTC 146417 ||||| || | |||| |||||||| ||| | ||||| || ||| ||||| Sbjct 1868059 TCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGA-GCAGCTGCGCCTCGGG 1868117 Query 146418 GCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACAC 146476 ||| ||| | ||| || || | | | |||||||| || | || || | |||| | Sbjct 1868118 GCTTTCGAACGGG-TAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTC 1868176 Query 146477 CAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGT 146536 ||| || | ||| |||||| || | || | | || |||| |||| | | Sbjct 1868177 CAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTT 1868236 Query 146537 CGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACAT--- 146593 | ||||||||||| || || ||||| | ||| |||| | ||| | ||| | Sbjct 1868237 CAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACA-GATGC--CAGTTTTTTGA 1868293 Query 146594 AGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTAC 146653 ||||| | || | | | ||| |||| || |||||| ||||| ||||||| |||| Sbjct 1868294 AGTCATAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGAGCGATGGAGGCCAGATTAC 1868350 Query 146654 ATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACT 146713 | || || |||||| | | | |||| ||| | ||| | ||| ||||||||||||| Sbjct 1868351 AAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACT 1868410 Query 146714 TGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGT 146773 ||||| |||||| || | || || || | ||||||| | ||| ||||||||||||| Sbjct 1868411 TGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGT 1868470 Query 146774 ACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CTG-GCCTT 146831 |||| |||||||| | | ||||| |||| | | |||| || ||| ||||| Sbjct 1868471 ACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATG--GCGTACCAAAGCTGCTGAGCCTT 1868528 Query 146832 TACTTGTC-TTTCGTACAGT-TTATTCTTTTCGTATTTCTCGTACAATATTTCAAA--AC 146887 || | ||| || | | ||| |||||| || ||| | | ||||| | Sbjct 1868529 CACCACCCGCTTC--ACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCC 1868586 Query 146888 TAGAACC-GTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCT 146946 | || | ||||||| ||| |||||| ||| | |||||| | ||| ||||| ||| Sbjct 1868587 TCCCCCCAGCACTCGTC---GAGCCCGGGACACTCGTCGGGACACATCAGAGACCAGTCT 1868643 Query 146947 TTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGG 146991 | || || ||| || | ||| |||| ||||| ||||| ||| Sbjct 1868644 TGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGG 1868688 >seq23 Length=4589928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 3277376 CGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 3277317 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 3277316 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 3277257 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 3277256 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3277197 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || || || ||||| ||||||||| Sbjct 3277196 GTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 3277161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || || ||||| || || || || || || ||||| | Sbjct 3279340 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCA 3279281 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || |||||||||||| Sbjct 3279280 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 3279221 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | || || || | ||| | Sbjct 3279220 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATG 3279161 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || ||||| ||||| ||||||||| Sbjct 3279160 GTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATG 3279125 >seq332 Length=374033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| |||| || | ||| || |||||| | |||||| |||||| |||| ||||| Sbjct 70924 TACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTG 70983 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| ||| ||| ||||| Sbjct 70984 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTC 71033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482534825520