Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq80 214 2e-50 seq332 89.7 5e-13 >seq80 Length=2229659 Score = 214 bits (236), Expect = 2e-50 Identities = 895/1399 (64%), Gaps = 34/1399 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGG-ACG 122956 ||||| ||||| || || || ||||||||| | || | | || | ||||| ||| Sbjct 1869197 AAGGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACG 1869138 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 |||||||| || | ||| || ||| | || |||| | || | ||||| ||||| Sbjct 1869137 -GACATCGACGCGGCCATCGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGC 1869079 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 || || | ||| |||||| || || ||| ||| |||| || || |||| Sbjct 1869078 CTCCCCGACCCTCTTCAACGCCGGGACCAACCGGCCACAGCTGTCCAGCTGCTTCCTGCT 1869019 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 | || || || ||||||||| || || || || || || | ||||| | || Sbjct 1869018 CGCCATGAAAGACGACAGCATCGAGGGCATTTACGACACCCTGAAGCAGTGCGCCCTCAT 1868959 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 |||||||| | |||||||| ||||| || | | | |||| ||| ||| Sbjct 1868958 TTCCAAATCCGCTGGCGGCATCGGCGTCGCGGTCAGCTGCATCAGAGCAACCGGGAGCTA 1868899 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| ||||| |||| | | | |||| | | |||||||| |||||||||| || Sbjct 1868898 CATCGCCGGCACCAACGGGAACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAA 1868839 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAAGGCGCGATG-----GCGATCTAT 123311 | | | || |||| |||||||||||||| |||||| || | ||||| || Sbjct 1868838 CACTGCTCGCTACGTTGACCAGGGCGGCAACA--AAAGGCCCGGAGCCTTCGCGATGTAC 1868781 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || ||||||||| | || |||| || || | | | || |||| ||| Sbjct 1868780 CTGGAGCCGTGGCACTTCGACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGGAAAA 1868721 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || ||| |||| | || | || ||||| | ||| | ||||| |||| ||| Sbjct 1868720 GAGGAGCAGAGAGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAG 1868661 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAG 123490 || || | | || | ||||| || ||||||||||| ||||||||| || || Sbjct 1868660 CGAGTGGAGAGCAACCAAGACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGA- 1868602 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA---- 123546 ||| | || | ||||||| || | ||| || ||||||| || || | Sbjct 1868601 CGAGTGCTGGGGGGAGGAGTTTGAGAAGCTTTACACGACATACGAGAAGGAGGGGAGGGT 1868542 Query 123547 -AACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605 || || | || | | | ||| | |||| | | || ||||| | || Sbjct 1868541 GAAGCGGGTGGTGAAGGCTCAGCA---GCTTTGGT--ACGCCATCATCGAGTCGCAGACG 1868487 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct 1868486 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAG 1868427 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 ||| |||| || || || || || || || ||| | || | | || |||| | ||| Sbjct 1868426 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCA--GCC 1868369 Query 123726 --GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG----AA 123779 || | ||||| || |||||| |||| || || | || | |||| | Sbjct 1868368 AAGACGAGGTGGCGGTTTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACGCCAG 1868309 Query 123780 AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 | ||| ||| | | ||| ||| || | | || ||| | || || || || Sbjct 1868308 AGCGGA-CTTATGACTTCAAAAAACTGGCATCTGTGACCAAAGTAATCGTGAAAAACCTG 1868250 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 ||||| || || || | || | || || | ||||| ||| || | Sbjct 1868249 AACAAGATCATTGAAATCAACTACTACCCGGTCCCCGAAGCCGAGAGGTCCAACAAGCGC 1868190 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||||| || | ||| | || | ||||| ||||| ||||| || | || |||| Sbjct 1868189 CACAGGCCAATTGGAATCGGAGTCCAAGGCTTGGCAGACGCCTTCATCTTGATGCGTTAC 1868130 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| ||||||| ||| || || |||| || | || || || || || || ||| Sbjct 1868129 CCGTTCGAAAGCCCCGAGGCGCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACTAC 1868070 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| |||||||||||||||| || || | |||| | ||||| | |||| Sbjct 1868069 GCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAA 1868010 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 ||| ||| | ||| | || | |||||||||||||||||| |||||||| | Sbjct 1868009 GGCTCCCCCGTCAGCAGGGGCGTCCTGCAGTACGACATGTGGAGCAAGACACCGACGGAC 1867950 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGC 124197 |||||||||||| | | || | | | |||| | ||||| || | ||| | Sbjct 1867949 CTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGCC 1867892 Query 124198 TGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCT 124257 || || ||||| ||||| ||||| ||||||| || || | || |||||||| ||| Sbjct 1867891 TGCTGCTGGCGCCGATGCCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTCCA 1867832 Query 124258 TCGAGCCGTTCACTAACAA 124276 ||||| | | ||| | ||| Sbjct 1867831 TCGAGGCCTACACCAGCAA 1867813 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || || || |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 71033 GAAACGGGGACACCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAA 70974 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || |||| || ||||| ||| | ||| || | || |||| Sbjct 70973 AACCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAAGTTGTAGAGTACA 70922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451985837427080