Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq54 140 5e-28 seq22 109 8e-19 seq10 105 1e-17 >seq54 Length=3035547 Score = 140 bits (154), Expect = 5e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||| ||||| ||| || |||||||||||||| ||||||||| || Sbjct 2624897 GCGGTGTTGACGATGCTGAAACCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 2624838 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| || || || | ||| || |||||||||| ||| | Sbjct 2624837 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 2624778 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| ||||||||||| ||| || ||||| || || | | ||| | |||||| Sbjct 2624777 ATGGTCTCCCCGAAGATGGCGTTGGGCCGGGGTTTCTCCACCAGCAGGCCGGGGTAGAGC 2624718 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || || || | || | | |||| | ||||| || || ||||| ||| Sbjct 2624717 TCCACTGCATCCACATCTTCGTACATCTCCTCCAGCAATGCAGCCATTTCTTTCTCTCCT 2624658 Score = 100 bits (110), Expect = 4e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||| | |||||| |||| || || |||||||||| || || ||||| || Sbjct 2623745 ATCAGGCATCAGTGGGTGCCAGTGGTACAGAGTGTTGAACTCGGATGCGATGCGGTTTTG 2623686 Query 9612 GTACTGAAAGGCGGTACC-GAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||| ||| || | | ||| || | ||| |||||||| | |||| ||||||||||| Sbjct 2623685 GTACTGGAAG-CGCTGGCTGAAGAGCAGCTCAGGGTCAAACTTGAGCTTGAAGTGGTACC 2623627 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || || ||||| || || Sbjct 2623626 CACTCAGGTGCTGCACGTA 2623608 >seq22 Length=4639432 Score = 109 bits (120), Expect = 8e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 ||||| |||||||||||||| ||||||||| | |||||| |||| ||| ||| || Sbjct 4116993 TCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGTTTCCCAGCAGG 4116934 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||| || ||||| |||| ||| | ||||||||||| || || ||| Sbjct 4116933 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATTAGGTTAGGA 4116874 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || | ||| || | |||| ||||| || | || | ||| || | ||| |||||||| Sbjct 4116873 CGAGTTTTCTCCAGCATGATGCCAGGATAAAACTCCAGAGCGTCAATGTCTCCATAGAGT 4116814 Query 9143 GCTTCCAA 9150 | ||||| Sbjct 4116813 TCCTCCAA 4116806 >seq10 Length=6656597 Score = 105 bits (116), Expect = 1e-17 Identities = 172/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 |||| ||||||||||| || || || | || || ||||||||||| |||||||| | Sbjct 2050300 GCGGAGTTCACGATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCT 2050359 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || |||||| |||| ||||||| || || | ||| || || || |||| || | Sbjct 2050360 GGCGAACAGATGGGGTTCCCCATGAGGCCCTTGAGGGAGAAGGGGGCGCCCATTTCCACC 2050419 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || || | ||| || || || | ||| || | | || || | || | | Sbjct 2050420 ATGCTTTCTCCAAACACGGCCCCCGGCCGTGTTTTCTCCAGCAATAATCCGGGATAAAAT 2050479 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGC-AGCTATCTCCTTCTCACC 9174 || | ||| |||| ||| || ||||| || ||| | || |||||||||| ||| | Sbjct 2050480 TCAAGAGCGTCGATGTCACCGTAGAGCTGTT-CAAGTGTGCTGGCTATCTCCTCGTCATC 2050538 Query 9175 TACAA 9179 | ||| Sbjct 2050539 TGCAA 2050543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723700199798200