Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq80 165 1e-35 seq478 91.5 2e-13 seq332 89.7 6e-13 >seq80 Length=2229659 Score = 165 bits (182), Expect = 1e-35 Identities = 890/1390 (64%), Gaps = 42/1390 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 1867807 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAC 1867866 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || || ||| Sbjct 1867867 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 1867926 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTG-TCTCCCCCTCCCACATATCAAACTGGAG 116081 || || | |||||| | | | | | | || |||| |||| || |||| || Sbjct 1867927 TTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCC-ACATGTCGTACTGCAG 1867985 Query 116082 GATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || || | |||| || || || || | ||||| || ||||| | | ||| Sbjct 1867986 GACGCCCCTGCTGACG--GGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCC 1868043 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | ||| |||||||||| ||||| |||| || || |||||||| || | || | Sbjct 1868044 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGC 1868103 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCT 116259 || |||||| | || |||| | ||| ||| || || | || || | ||| Sbjct 1868104 AGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCT 1868163 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGG 116318 ||||| |||| |||||||| | || | | | || ||| | ||| || || || Sbjct 1868164 TGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCG-GCTTCGGGGACCGG 1868222 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || | || | || || | | | || || ||||| || || || || | ||| Sbjct 1868223 GTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAG-ATG 1868281 Query 116379 A-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 || |||| | | ||| || | || |||| |||| ||| | || ||||| | Sbjct 1868282 CCAGTTTTTTGAAGTCATAAGTCCG---CTCTGGCGTGACGTACATGTTGAGAGCGATGG 1868338 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 | ||||||||||| || | ||| || | |||||||| | | ||||| |||| Sbjct 1868339 AGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACA 1868398 Query 116498 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 116557 || | ||| |||||||||| ||||| ||||| ||| |||| ||||| || | Sbjct 1868399 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTT 1868458 Query 116558 TGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CA 116616 |||||||||| || ||||| || || ||||| || |||| || || || | ||| | | Sbjct 1868459 TGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCT 1868518 Query 116617 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCC 116676 | | | || || || || | | |||||||| |||||| | ||||| || | Sbjct 1868519 GCTGAGCCTTCACCACCCGC-TTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTC 1868577 Query 116677 TCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGA 116735 |||||||| || ||| |||| ||| |||||| || || || ||||| | ||||| Sbjct 1868578 TCAAACTCCTC-CCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGA 1868636 Query 116736 CCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 ||| ||| | |||| || ||||||||||| ||||| |||||||| || || | Sbjct 1868637 CCAGTCTTGGTTGCTCTCC---ACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTA 1868693 Query 116793 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 |||||| |||| | | ||| || | ||| || || || ||||| || | Sbjct 1868694 GAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTG-TTCTTCTTCAGCTCCAGGAATT 1868752 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTGCGACGA 116907 | | | || ||||||||| |||||||||| ||||| | | |||| | | Sbjct 1868753 CAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTG- 1868811 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| || || | || || ||| | || | ||||| || | | || Sbjct 1868812 CCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCG 1868871 Query 116968 TCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATG 117024 | || | || || || || ||| | | ||| ||||||| || | || | Sbjct 1868872 TTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTT-GCTCTGATGCAGC-TGACCG 1868929 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | | || || || || || | || || || | ||||||| | | || || |||| Sbjct 1868930 CG-ACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAA 1868988 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC-- 117142 || || ||||| ||| | || | |||| ||||||||||| |||| ||||||| Sbjct 1868989 ATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGG 1869048 Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 117201 ||| || || |||||||||||||| || | |||||| ||||| || | | |||| | Sbjct 1869049 TTG--GTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGC 1869105 Query 117202 TTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGC 117261 | ||| ||||| | | | | | ||||| |||||| || || | || |||| | Sbjct 1869106 AGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTC 1869165 Query 117262 ATAAACATGT 117271 || | ||||| Sbjct 1869166 ATGAGCATGT 1869175 >seq478 Length=201109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| ||||||||| ||||| | Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 176058 CCACCACACGCTC 176046 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | || || |||||||||||||| ||||||||| ||||| | Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 188488 CCACCACACGCTC 188500 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| | | |||||||||| || |||||| |||| ||| || | | | |||||| Sbjct 70908 CTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATT--TGATGGTG 70965 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||| | || || ||| |||| || || |||||||||||||| ||||| ||| Sbjct 70966 CCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTC 71025 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||| || || || |||| || || || | ||| Sbjct 71026 CCCGTTTCTGTCTGCGACTCGATGATGGCGTACCA 71060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483633654680