Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq80 212 1e-49 seq332 111 3e-19 >seq80 Length=2229659 Score = 212 bits (234), Expect = 1e-49 Identities = 588/890 (66%), Gaps = 24/890 (3%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||| ||| ||||||| ||| | |||||| | |||| | |||||| || Sbjct 1868379 CTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCT 1868438 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | ||| ||||| | |||| ||||| ||||| | ||| |||| || || Sbjct 1868439 CTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTC 1868498 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | |||||| |||| ||||||| | |||| | Sbjct 1868499 GATGA-TGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCAC---CCTCCCCTCCT 1868554 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||||||| | ||||| ||| | |||| || || | || |||| | |||| | Sbjct 1868555 TCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGA---GCCCGG 1868611 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | | |||||||||||||||||| || | | | ||| | || ||| |||| Sbjct 1868612 GACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACA 1868671 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| |||||||||| |||| || || || | ||| || | || | ||| || Sbjct 1868672 GGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGT 1868731 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||| |||| ||||| | | | |||| |||||||||||| | ||| || | Sbjct 1868732 TCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGA 1868791 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || ||||| ||||| || |||||||| || ||||| | |||| |||||| Sbjct 1868792 AGGCTCCGGGCCTTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTC 1868851 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 |||||| || |||| ||||| | | ||||||| |||| | |||| || | Sbjct 1868852 TCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTG 1868911 Query 205416 CCCTCACGTTGGAGATGGCCG---CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472 | || | || || || ||| |||| || ||||||| | |||| || |||||| Sbjct 1868912 CTCT---GATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGC 1868968 Query 205473 ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGC 205532 ||| | ||| ||| ||| ||||| ||||| ||||| || | | ||| ||| Sbjct 1868969 ACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGC 1869028 Query 205533 ACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 | | ||||| |||| |||||| || |||| |||||| || ||| ||||||| || Sbjct 1869029 AGCTGGACAGCTGTGGC-CGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTG 1869087 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCA-GCACGCTCTCCAGATCGAAGCCGTG 205650 || | |||||| || |||| ||||| | | ||| || | || ||||| Sbjct 1869088 AACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGC-GTCGATGTCCGTCCCGTG 1869146 Query 205651 AATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCAC 205710 || || | | | |||||||| | ||| || || | ||| |||| | |||| || Sbjct 1869147 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGAC 1869206 Query 205711 CTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 | | |||||||||| | ||| || || || |||| |||||| ||| Sbjct 1869207 CCTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGG 1869256 Score = 188 bits (208), Expect = 1e-42 Identities = 353/513 (69%), Gaps = 7/513 (1%) Strand=Plus/Plus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| ||| ||||| | || || ||||||| | ||||| ||| Sbjct 1867679 CCTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCC 1867738 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | ||| || || |||||||||||||| |||||| || || ||||| || |||| Sbjct 1867739 TCTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCC 1867798 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| | Sbjct 1867799 TGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 1867858 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 | ||| ||||||||||| || ||||| |||||| ||| | ||| |||| ||| || Sbjct 1867859 CAGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 1867918 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| || | | ||| || || |||||||||| Sbjct 1867919 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGT 1867978 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457 |||| | || ||| ||||| ||| ||| | ||||||| || ||| || ||| Sbjct 1867979 ACTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCG 1868037 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||||| ||| || ||| |||| ||||| ||||||||||| ||||| | | Sbjct 1868038 GCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATG 1868097 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| ||||| | | || |||| || || || | || |||| | Sbjct 1868098 TTGAGCAGCTG--CGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTG 1868155 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||||||| || ||||||||||| | || |||| Sbjct 1868156 CCAAGCCTTGGACTCCGATTCCAATTGGCCTGT 1868188 >seq332 Length=374033 Score = 111 bits (122), Expect = 3e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | |||||||| || || || || |||||||| Sbjct 68421 CTTCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCTGTAATTTGGCTCAGCGATGTGAAT 68480 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||||||||||||||| ||||||||| || ||||| |||||||| ||||| |||| | | Sbjct 68481 GTTCAGAGACTGGCTCTGGTCGATGTAA-GCGCCACGATCTGCTGCCATCTTGAGGACAG 68539 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || |||||||| || || Sbjct 68540 TTTTCTGAGAGATTTCCCACACGGTTTT 68567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795124656100880