Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23 140 8e-28 >seq23 Length=4589928 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || || || || |||| ||| ||||||| || || | ||||| Sbjct 3279338 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATC 3279279 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || || || || || Sbjct 3279278 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3279219 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| ||| ||| || || | ||||| || Sbjct 3279218 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATGGT 3279159 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| ||||| || || Sbjct 3279158 CTTCCCAGTGAGGGTTTTGACAAAGATCTG 3279129 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 3277374 CAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 3277315 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || || || || || Sbjct 3277314 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3277255 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| ||||| || Sbjct 3277254 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 3277195 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 3277194 CTTCCCAGTGAGGGTCTTGACAAAGATCTG 3277165 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| |||||||| || || || || |||| ||||||||| | || || | ||||| Sbjct 3279566 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 3279507 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || || ||||| || Sbjct 3279506 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 3279447 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || || | ||||| || Sbjct 3279446 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 3279387 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 3279386 CTTCCCAGTGAGGGTCTTGACAAAGATCTG 3279357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178875182540891