Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 125 7e-24 seq478 111 2e-19 seq3 111 2e-19 >seq23 Length=4589928 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| || || ||||||||| | || || ||| || Sbjct 3277159 AACATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 3277218 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| ||||| || ||| | || Sbjct 3277219 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 3277277 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | |||||||| ||||| Sbjct 3277278 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 3277337 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || |||| |||||| | || ||||| Sbjct 3277338 CAACATCCAGAAGGAGTCAACCCTTCACCTGGTCCTGCGTCTCAGGGGCGG 3277388 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || || ||| ||| Sbjct 3279354 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAGT 3279413 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || ||| | ||||| Sbjct 3279414 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 3279472 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 3279473 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 3279532 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || || || |||| |||||| |||| || || Sbjct 3279533 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTGAGGGGGGG 3279580 >seq478 Length=201109 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||| ||||||||||| ||||||| |||||| |||| Sbjct 175592 ACCAGGTTCTCGTTGACGATGCCGTCACTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 175533 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | || |||| |||||||| || |||||||||||| |||||| Sbjct 175532 AAGTAGCGCTCTTCATCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGATCCACC 175473 Query 133399 T 133399 | Sbjct 175472 T 175472 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||| ||||||||||| ||||||| |||||| |||| Sbjct 189049 ACCAGGTTCTCGTTGACGATGCCGTCACTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 189108 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | || |||| |||||||| || |||||||||||| |||||| Sbjct 189109 AAGTAGCGCTCTTCATCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGATCCACC 189168 Query 133399 T 133399 | Sbjct 189169 T 189169 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| | || | Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||| ||||| || || ||||||| ||||| || || ||||| | Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 176058 CCACCACACGCTCTCC 176043 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| | || | Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| |||||| || || ||||||| ||||| || || ||||| | Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 188488 CCACCACACGCTCTCC 188503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||||||| || || | ||||| || ||||| ||||||||||||||||| || Sbjct 175790 GTAGGTGTCGATCAGCAGGCTG--TACATCTCAGAGTGAACGTTCTCCATGGCGATCTGG 175733 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || ||||||| ||||| |||||| ||||| || | ||| || || ||| Sbjct 175732 AAACCATAGAAGCACCTGGCCTCCGGCACCTGAACTTCCTGCGTGAAGCGTTCCACC 175676 >seq3 Length=10095097 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| ||| ||||| ||| | | |||| ||||||||||||||| | || | Sbjct 6543100 CCTCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCT 6543041 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | |||||| | ||||| || ||| |||||| ||||||| |||||| || || || |||| Sbjct 6543040 TTAGCCAATAGATGGCAGCAAAAGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAAG 6542981 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 6542980 CCACAAGTCGCTCCCC 6542965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATG 133449 || ||||||||||| || ||||| || || |||| || | |||||||| |||| ||| Sbjct 6541600 AGATCCACCTCCTCCACTGTCCAGAAAGAGGCCTGTGCCTGCTTGTACATCTTCCAGATG 6541541 Query 133450 TCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCG 133496 |||| ||| || |||||||| || || ||||| | |||||| || || Sbjct 6541540 TCCGGATACTGGATGGGAAAGATGACGAACCGCCTGGGGTTCTCCCG 6541494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153587112320