Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq42 131 7e-25 seq93 109 2e-18 >seq42 Length=3555476 Score = 131 bits (144), Expect = 7e-25 Identities = 454/699 (65%), Gaps = 21/699 (3%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || |||||||| || ||||||| || ||||| ||||||| ||| | ||||| ||| Sbjct 3352342 ATCGGCATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACGGAAAAGTA 3352401 Query 450977 GAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGT----TTTA 451031 ||||| || || || || ||||| | || || | ||||| || | || || |||| Sbjct 3352402 GAAATCATCGCTAACGATCAAGGCAACAGGA-CGACTCC--CA--GCTACGTGGCCTTTA 3352456 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATG----CC 451087 | || ||||||| || | || | ||||| ||| || || || ||| || Sbjct 3352457 CAGACACAGAAAGGCTCATTGGAGATGCTGCCAAA--AACC--AAGTTGCCATGAACCCC 3352512 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 | ||||| | | ||| || || || | ||||| | | || ||| || | || Sbjct 3352513 ACCAACACGATCTTTGACGCCAAGCGGCTCATTGGGAGAAAGTTTGACGACGCGGTGGTC 3352572 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || || | ||| ||| ||| | || ||||| | || || ||||| | | Sbjct 3352573 CAGTCCGACATCAAACTCTGGCCTTTCAAGGTGATAAATGACAATGGGAAGCCTAAAGTC 3352632 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 || || | |||||||| || ||||| |||| ||| || || ||||| || |||||| Sbjct 3352633 CAGGTGGAATATAAAGGGGAGACTAAGGCTTTCTGTCCAGAGGAGATTTCTTCAATGGTT 3352692 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 || |||||||| ||| | || || | | | || || | ||||||| Sbjct 3352693 CTGGTTAAAATGAGAGAGATTGCTGAGGCCTTTCTGGGACAGAAGGTGTCAAATGCAGTC 3352752 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 ||||| || || |||||||||||||| | || ||||||| || |||||||| || Sbjct 3352753 ATTACGGTGCCTGCTTATTTCAATGACTCGCAGAGGCAAGCCACCAAAGATGCTGGCGTG 3352812 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || |||| |||| |||| | || || |||||||| ||||| || || | || || Sbjct 3352813 ATCTCTGGACTAAACATTCTGAGGATCATCAATGAACCCACAGCGGCAGCCATTGCCTAC 3352872 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || || ||| || | ||| || ||| ||| | | | || ||| |||||||| Sbjct 3352873 GGCCT-GGATAAGGGGA--AAAGAGGAGAGCGCAATGTGCTCATCTTCGATCTTGGTGGA 3352929 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || || || | || | ||||| ||||| |||||||||| || || || Sbjct 3352930 GGCACCTTCGACGTGTCCATCCTGACCATTGAGGATGGCATATTTGAAGTGAAAGCCACA 3352989 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || || || || || || || |||| ||| Sbjct 3352990 GCAGGGGACACACACCTCGGTGGGGAGGACTTTGACAAT 3353028 >seq93 Length=1971969 Score = 109 bits (120), Expect = 2e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || ||||| ||||| |||||||| | ||||| ||||| || ||||||| Sbjct 1913026 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAACGCCAAGCCACCAAAGATG 1912967 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| || ||||| | ||||| || || || ||||||||||| ||||| || ||| Sbjct 1912966 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCTGCAGCTA 1912907 Query 451440 TAGCATATGGACT 451452 | |||||||| || Sbjct 1912906 TTGCATATGGCCT 1912894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975640610409884