Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq42 223 3e-52 seq93 122 7e-22 seq460 91.5 1e-12 >seq42 Length=3555476 Score = 223 bits (246), Expect = 3e-52 Identities = 967/1510 (64%), Gaps = 22/1510 (1%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| || || || || || || | |||| || ||| ||| | || | |||||| || Sbjct 3353838 ATTGGTGATTGTGATTTTGTTCGTTTTGCCGGTGCTTTTGTCAACAGCCGACACATTTAG 3353779 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||| |||||||| | ||||| || || || || || || || || || |||| || Sbjct 3353778 GATACCGTTGGCATCGATGTCAAAGGTTACCTCTATCTGCGGCACGCCCCTGGGAGCCGG 3353719 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||||| ||| | | ||| | || || ||| || || || || | || ||| Sbjct 3353718 CGGGATACCTGTGAGCTCAAACCTCCCGAGCAGATTGTTGTCCTTGGTCATGGCTCTTTC 3353659 Query 517393 ACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 ||| || | | || || |||| || ||| || |||||||| || || | || | || Sbjct 3353658 ACCTTCATACACCTGAATCAGTA-CTCCAGGCTGGTTATCTGAGTATGTGGAGAAGA-TC 3353601 Query 517452 TGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCT 517510 || | | || || ||||| ||||||| | |||| |||||||| || ||| Sbjct 3353600 TGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGTTTGATAAGGGGGGTCATAACTCCTCCT 3353541 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || ||||| | || ||||| || || | || || | || | | || || | || Sbjct 3353540 GCGGTTTCAATCCCCAGAGACAGGGGCGCCACGTCCAGCAGCAGCAAATCCTGGACGTTC 3353481 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || || | || | || ||||| || || | ||||||||||| || || |||||| Sbjct 3353480 TCTGAGGTGTCGCCCATGAGGATAGCAGCCTGGACTGCAGCACCATAGGCCACTGCTTCA 3353421 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 517689 ||||| || | | | || || | ||||||||| || || | || |||| || | Sbjct 3353420 TCAGGGTTGATGCTCTTGTTCAGCTCTTTACCATTAAAGAAGTCCTGTAAGAGCTTCTGG 3353361 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | || || || | | || || ||||| | ||||||||||| | || || ||||| Sbjct 3353360 -ATTTTGGGTATCCTTGTGGAACCACCAACCAGGACAATTTCATGGATCTTGGACTTATC 3353302 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 ||| || | || | | || ||||| || || || |||| || | || || Sbjct 3353301 CAGCTTAGCGTCTTGCAGGGCCTTCTCAACTGGCTCCAGTGTTCCTCTGAAGAGATCCGA 3353242 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 517867 || || || || || || || || ||| | || || || || || || || Sbjct 3353241 GTTGAGCTCCTCAAAACGTGCCCTTGT--GATTGAGGTATAGAAGTCGATACCCTCAAAT 3353184 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 | ||| || | ||||| ||| |||| || || | | | || || | ||| Sbjct 3353183 AGAGAGTCGATCTCAATGCTAGCCTGAGAGCTGGAGGACAAGGTCCTCTTTGCTCTCTCA 3353124 Query 517928 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATT 517985 || ||||||| || || || | ||| || | ||| | | || | || | || Sbjct 3353123 CAGGCTGTCCGCAGCCTCCGCACTGCTCTT--TTATTCTGGGCGATGTCCTTCTTGTGTT 3353066 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 ||||||| || || |||||| | | || | ||||| ||||| || || || || | Sbjct 3353065 TTCTCTTAAACTCCTCAACAAAGTGACTGACCATCCGATTGTCAAAGTCCTCCCCACCGA 3353006 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | || | |||| || ||| | |||| || | ||||| |||| | || | | Sbjct 3353005 GGTGTGTGTCCCCTGCTGTGGCTTTCACTTCAAATATGCCATCCTCAATGGTCAGGATGG 3352946 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165 || || ||| || ||||| | ||| || || || ||||| ||| |||| | Sbjct 3352945 ACACGTCGAAGGTGCCTCCACCAAGATCGAAGATGAGCACATTGCGCTCTCC-TCTT--T 3352889 Query 518166 TT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||||| || || || |||| || || || || |||||||| || || |||| || Sbjct 3352888 TCCCCTTATCCAGGCCGTAGGCAATGGCTGCCGCTGTGGGTTCATTGATGATCCTCAGAA 3352829 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 || || |||| || || |||||||| |||||||| || || || || || |||| Sbjct 3352828 TGTTTAGTCCAGAGATCACGCCAGCATCTTTGGTGGCTTGCCTCTGCGAGTCATTGAAAT 3352769 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTT 518341 | ||||| || ||||| || |||| | || |||| | ||| | | || || | Sbjct 3352768 AAGCAGGCACCGTAATGACTGCATTTGACACCTTCTGTCCCAGAA-AGGCCTCAGCAATC 3352710 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA 518401 | | |||||||| | || |||||| ||||| | ||||| | | ||| | || Sbjct 3352709 TCTCTCATTTTAACCAGAACCATTGAAGAAATCTCCTCTGGACAGAAAGCCTTAGTCTCC 3352650 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461 || |||| || | | | || || | |||| || || || || |||||| Sbjct 3352649 CCTTTATATTCCACCTGGACTTTAGGCTTCCCATTGTCATTTATCACCTTGAAAGGCCAG 3352590 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 ||| || || || || || ||| | ||| | ||| ||||| | || || || Sbjct 3352589 AGTTTGATGTCGGACTGGACCACCGCGTCGTCAAACTTTCTCCCAATGAGCCGCTTGGCG 3352530 Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581 ||||| || || ||||| || || || ||| |||| | |||||| ||||||||||| || Sbjct 3352529 TCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTTTTGGCAGCATCTCCAATGAGC 3352470 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 |||||| |||||||| | || || ||||| || | || |||||||| || || Sbjct 3352469 CTTTCTGTGTCTGTAAAGGCCACGTAGCTGGGAGTCGTCCTGTTGCCTTGATCGTTAGCG 3352410 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 || ||||| ||||| || | || | ||||| |||||| | || || || | |||| Sbjct 3352409 ATGATTTCTACTTTTCCGTGCTGGAAAACACCAACACAAGAGTAGGTGGTGCCCAGATCA 3352350 Query 518702 ATACCAATAG 518711 || || |||| Sbjct 3352349 ATGCCGATAG 3352340 >seq93 Length=1971969 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||| ||||| || ||||||||||| || | || ||| Sbjct 1912885 TTTTTGTCGAGGCCATATGCAATAGCTGCAGCTGTGGGTTCATTAATGATACGCAGCACA 1912944 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||| ||| |||| |||||||| |||||||| | ||| || || || || || Sbjct 1912945 TTGAGACCAGAGATTGTTCCAGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTAA 1913004 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || ||||| |||| Sbjct 1913005 GCAGGAACTGTGATAACTGCAT 1913026 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| || || ||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 1910219 CACATTGAGGATTCCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGGACGCCTCT 1910278 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 |||||||||| || || || | |||| | ||||| ||||||| || || || | Sbjct 1910279 GGGAGCAGGTGGTATACCAGTCAGTTCAAATTTCCCCAGGATATTATTGTCCTTGGTCAT 1910338 Query 517384 TTTTCGTTCACCCTC 517398 || |||||| || Sbjct 1910339 GGCTCTTTCACCTTC 1910353 >seq460 Length=216781 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| ||||| |||| |||||| |||||||||||||| || || | | |||||| || | Sbjct 116896 CAAG-CCATAAGCAATAGCAGCTGCAGTTGGTTCATTGATGATACGGAGAACATTGAGGC 116954 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 ||| ||| | || ||||| || ||||| || | || || ||||| || || ||||| | Sbjct 116955 CAGAAATGGTCCCAGCATCCTTTGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGTA 117014 Query 518292 CAGTAATAACGGCAT 518306 | || || || |||| Sbjct 117015 CTGTGATTACAGCAT 117029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780669907617538