Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq80 140 4e-28 seq478 82.4 9e-11 >seq80 Length=2229659 Score = 140 bits (154), Expect = 4e-28 Identities = 939/1489 (63%), Gaps = 36/1489 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||| |||| || | || ||||| ||| || || || | | Sbjct 1869183 CCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACGGACATCGACGCGGC 1869124 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||| || | |||| | || ||||| |||||| | || ||||||| Sbjct 1869123 CATCGAGACGTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCT 1869065 Query 111730 TCAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||| || || ||| | || || ||||||| || ||||| | || | || || Sbjct 1869064 TCAACGCCGGGAC--CAACCGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGA 1869007 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| | |||||||||| ||| || | | || |||| || || || | || Sbjct 1869006 CGACAGCATCGAGGGCATTTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 1868947 Query 111848 TGGTGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 ||| || ||||| | | | || | || ||||||| | | | || || Sbjct 1868946 TGGCGGCATCGGCGT-CGCGGTCA-GCTGCATCAGAGCAACCGGGAGCTACATCGCCGGC 1868889 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || | || | || | | || ||||| | || | ||| ||| || ||| Sbjct 1868888 ACCAACGGGAACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAACACTGCTCGC 1868829 Query 111966 TATGTAAACCAAGCTGGGCGTCGCAAGG----GATCTATCGCAGTCTATCTTGAGCCATG 112021 || || |||| | || | | |||| || | |||| | || || ||||| || Sbjct 1868828 TACGTTGACCAGGGCGG-CAACAAAAGGCCCGGAGCCTTCGCGATGTACCTGGAGCCGTG 1868770 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||| || | | || ||||| ||| || ||| || | |||||| | | Sbjct 1868769 GCACTTCGACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGGAAAAGAGGAGCAGAG 1868710 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 | | || ||||||| ||| || ||||| || || || ||||||||| |||| ||| Sbjct 1868709 AGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGT---GGA 1868653 Query 112142 GAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCG 112197 ||| | | |||||||| | ||||| ||| || ||||| ||| ||| ||| | Sbjct 1868652 GAGCAACCAAGACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGACGAGTGCTG 1868593 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 ||| ||||||||||| || ||||| | |||||| | || | ||| || | Sbjct 1868592 GGGG-GAGGAGTTTGAGAAGCTTTACACGACATACGAGAAGGAGGGGAGGGTGAAGCGGG 1868534 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 |||| ||| | | ||| | || || || |||| || || || || || || | Sbjct 1868533 TGGTGAAGGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAACCGGAACGC 1868474 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | || ||||| ||||||||||| || ||| ||||| ||||| |||| |||| | Sbjct 1868473 CGTACATGCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAACCTGGGCACCA 1868414 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| || || || || |||| | || | |||| ||| ||| | Sbjct 1868413 TCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAAGACGAGGTGGCGG 1868354 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | ||||| || || || ||||||||| || ||| || |||||| ||| | || Sbjct 1868353 TTTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACGCCAGAG---CGGACTTATG 1868297 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | ||||||| || || ||| || |||||||| |||| | |||| Sbjct 1868296 ACTTCAAAAAACTGGCATCTGTGACCAAAGTAATCGTGAAAAACCTGAACAAGATCATTG 1868237 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | ||||| || || | || || | | | ||| | ||||||| Sbjct 1868236 AAATCAACTACTACCCGGTCCCCGAAGCCGAGAGGTCCAACAAGCGCCACAGGCCAATTG 1868177 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT-CGCCACGCATTTGATTCC 112676 | |||| |||||||| | || || | |||| |||| | || || | || || | Sbjct 1868176 GAATCGGAGTCCAAGGCTTGGCAGACGCCTTCA-TCTTGATGCGTTACCCGTTCGAAAGC 1868118 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 ||| ||| || |||| | || |||||||| || || ||||||| || ||| Sbjct 1868117 CCCGAGGCGCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACTACGCCGCCCTGGAG 1868058 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 ||||| | ||| |||| | | || || || || || | || || |||| | Sbjct 1868057 GCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGG--CTCCCCCG 1868000 Query 112797 TCACAAGGG--GTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTACGAC 112853 ||| |||| || || || | || |||| ||| || ||| | | | | ||| Sbjct 1867999 TCAGCAGGGGCGTCCTGCAGTACGACATGT-GGAGCAAGACACCGACGGACCTGTGGGAC 1867941 Query 112854 TGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 | ||| ||| || ||||| ||| | | || | | ||||| || || |||| Sbjct 1867940 T-GGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGC 1867882 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || || ||||| || || ||| |||| || || || | | | || |||| Sbjct 1867881 GCCGATGCCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTA 1867822 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 ||| | |||||||| | || |||| | || ||||| ||| |||||| || Sbjct 1867821 CACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGATCGTCAACCCCCA 1867762 Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 || || | ||| | | |||| || || ||| | |||| |||||| Sbjct 1867761 CCTGCTGAAAGACATGACGGAGAGGGGGCTGTGGAGCGAGGAGATGAAG 1867713 >seq478 Length=201109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||||||||||| ||| || || | ||||| |||||| |||| Sbjct 176069 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 176128 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| ||||| |||| ||||||||| ||| | ||||||| Sbjct 176129 CCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 176178 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||||||||||| ||| | | || | ||||| |||||| |||| Sbjct 188477 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 188418 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| ||||| |||| ||||||||| ||| | ||||||| Sbjct 188417 CCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 188368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718555732560