Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq80 156 5e-33 seq332 100 3e-16 seq3 91.5 2e-13 >seq80 Length=2229659 Score = 156 bits (172), Expect = 5e-33 Identities = 652/1009 (65%), Gaps = 29/1009 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | | || || | || || |||||| Sbjct 1867713 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTGAC 1867772 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||| || | |||| || | |||||||| | ||||||| || | Sbjct 1867773 GATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1867832 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || || ||||| || || ||||| || |||| || || Sbjct 1867833 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGCAG 1867892 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 1867893 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1867952 Query 106081 CTT-GGTTTCACCTTCCCACATATCAAATTGAAGCAC--CCCTTGGGACGTGGGAGAACC 106137 | | ||| || ||| |||| || | || || || |||| |||| ||||| || Sbjct 1867953 CGTCGGTGTCTTGCTCC-ACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAG--CC 1868009 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 || | ||||| |||| || | | | |||| || |||||||||||||||| || Sbjct 1868010 TTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 1868069 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 || || ||||| ||||| || | || | | || || || || || | Sbjct 1868070 GTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAACGG 1868129 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || ||| || || | || || | ||||| || || | ||||| || ||||| Sbjct 1868130 GTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTG 1868189 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 ||| | || ||| | | || || || || || | || | ||||||| || Sbjct 1868190 GCGCTTGTTGGACCT-CTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGT 1868248 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATCAAAAGTGC 106433 | || ||||| || || | || | || || ||||||| | ||| |||| | Sbjct 1868249 TCAGGTTTTTC---ACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAAGTCC 1868305 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | |||| |||| ||| | || ||||| || |||| ||| ||||| ||| || Sbjct 1868306 G---CTCTGGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCT 1868362 Query 106494 CATCCTTATCTG-TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552 | || || ||| ||||||| | | || || |||| |||| | ||| || || ||| Sbjct 1868363 CGTC-TTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCC 1868421 Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612 | |||| || || ||||| |||||||||| || |||||||||||||| ||||| || Sbjct 1868422 AGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCG 1868481 Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT 106671 || |||||||| |||| || || || | ||| | | | | | || || || || Sbjct 1868482 GTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGC-TT 1868540 Query 106672 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 106730 ||| |||||| |||||| | ||||| || ||||||||||| ||| | || | Sbjct 1868541 CACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTC-CCCCCAGCACT 1868599 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAA 106787 || ||| || || || ||| ||||| | |||||||| ||| | |||| | Sbjct 1868600 CGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCC---A 1868656 Query 106788 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 | ||||||||||| ||||| || |||||||||| | ||||| || || Sbjct 1868657 CTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCT 1868705 >seq332 Length=374033 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | | ||||||||||| || ||| || |||| ||| || || || || Sbjct 70908 CTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCC 70967 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || || | ||||| ||||| ||||||| || ||||||||||||||||| || ||||| Sbjct 70968 CAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCC 71027 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||| || ||||| |||| || || || | ||||| Sbjct 71028 CGTTTCTGTCTGCGACTCGATGATGGCGTACCACA 71062 >seq3 Length=10095097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| |||||||| ||| | ||||| |||||||| || | ||||| Sbjct 6543100 CCTCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCT 6543041 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | |||||| || || ||| || || || ||||||||||| ||||||||| ||||| Sbjct 6543040 TTAGCCAATAGATGGCAGCAAAA-GAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAA 6542982 Query 117412 GCAAAAAGGCGCTC 117425 || | ||| ||||| Sbjct 6542981 GCCACAAGTCGCTC 6542968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958137362520