Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq42 152 4e-31 seq93 113 4e-19 seq460 109 4e-18 seq111 95.1 1e-13 >seq42 Length=3555476 Score = 152 bits (168), Expect = 4e-31 Identities = 371/553 (67%), Gaps = 12/553 (2%) Strand=Plus/Plus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 || |||| || || ||| | || ||||| || |||||||||||||| || | || | Sbjct 3352337 TATCTATCGGCATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACGGAA 3352396 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 |||| ||||| || || || |||||||| ||||| || ||||| || || | || | Sbjct 3352397 AAGTAGAAATCATCGCTAACGATCAAGGCAACAGGACGACTCCCAGCTACGTGGCCTTTA 3352456 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTA 550166 | || || ||| | |||| ||||| || ||| | ||| |||| || || || | Sbjct 3352457 CAGACACAGAAAGGCTCATTGGAGATGCTGCCAAAAACCAAGTTGCCA-TG--AACCCCA 3352513 Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTC 550226 |||| || || ||||| || || || | ||||| |||| ||| | || || || | Sbjct 3352514 CCAACACGATCTTTGACGCCAAGCGGCTCATTGGGAGAAAGTTTGACGACGCGGTGGTCC 3352573 Query 550227 AGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG 550286 || | || || || | ||||||||| | | | |||| ||| || || || | | Sbjct 3352574 AGTCCGACATCAAACTCTGGCCTTTCAAGGTGATAAATGACAATGGGAAGCC-TAAAGTC 3352632 Query 550287 AAGCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 || | | | || |||| ||| || | ||||| | ||||| || ||||| Sbjct 3352633 CAGGTGGAAT-ATAAAGGGGAGACTAAGGCTTTCTGTCCAGAGGAGATTTCTTCAATGGT 3352691 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | | ||||||| | | | || || ||| | || || | || | ||||||| Sbjct 3352692 TCTGGTTAAAATGAGAGAGATTGCTGAGGCCTTTCTGGGACAGAAGGTGTCAAATGCAGT 3352751 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || || || ||||| |||||||| || | ||||| || ||||||||||| || Sbjct 3352752 CATTACGGTGCCTGCTTATTTCAATGACTCGCAGAGGCAAGCCACCAAAGATGCTGG-CG 3352810 Query 550465 T-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 | || ||||||| || |||| | || ||||||||||| || || || || |||| | Sbjct 3352811 TGATCTCTGGACTAAACATTCTGAGGATCATCAATGAACCCACAGCGGCAGCCATTGCCT 3352870 Query 550524 ATGGACTTGATAA 550536 | || || ||||| Sbjct 3352871 ACGGCCTGGATAA 3352883 Score = 145 bits (160), Expect = 6e-29 Identities = 416/637 (65%), Gaps = 2/637 (0%) Strand=Plus/Plus Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| | || || |||||||||| || || | |||| | || | ||||| Sbjct 3353167 ATTGAGATCGACTCTCTATTTGAGGGTATCGACTTCTATACCTCAATCACAAGGGCACGT 3353226 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 ||||| || | || |||||||| ||| |||| | || ||||| || | | | Sbjct 3353227 TTTGAGGAGCTCAACTCGGATCTCTTCAGAGGAACACTGGAGCCAGTTGAGAAGGCCCTG 3353286 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 ||| | ||| | ||||| ||||| | ||||||||||| || |||||||| || ||| Sbjct 3353287 CAAGACGCTAAGCTGGATAAGTCCAAGATCCATGAAATTGTCCTGGTTGGTGGTTCCACA 3353346 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 || || || ||||| | | | ||| || ||| ||| ||||||||| | | || | Sbjct 3353347 AGGATACCCAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGTAAAGAGCTGAACAA 3353405 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || ||||| || || ||||||||||| ||| | || || ||||| || Sbjct 3353406 GAGCATCAACCCTGATGAAGCAGTGGCCTATGGTGCTGCAGTCCAGGCTGCTATCCTCAT 3353465 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 || | || || || | || || | | || | || || | || || ||||| Sbjct 3353466 GGGCGACACCTCAGAGAACGTCCAGGATTTGCTGCTGCTGGACGTGGCGCCCCTGTCTCT 3353525 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 || | ||||| | ||||| ||||||| |||||| | |||| || || || || Sbjct 3353526 GGGGATTGAAACCGCAGGAGGAGTTATGACCCCCCTTATCAAACGAAACACCACAATCCC 3353585 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 || | ||| | || || || || |||||||| || ||| || ||||| Sbjct 3353586 CACAAAGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCTGGAGTACTGATTCA 3353645 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | |||||| |||||| | || || || || |||| || || | ||| | | Sbjct 3353646 GGTGTATGAAGGTGAAAGAGCCATGACCAAGGACAACAATCTGCTCGGGAGGTTTGAGCT 3353705 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 |||||| || || ||||| | || || ||||| || || || || || || ||||| Sbjct 3353706 CACAGGTATCCCGCCGGCTCCCAGGGGCGTGCCGCAGATAGAGGTAACCTTTGACATCGA 3353765 Query 552563 TGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 |||||| || || | |||||| | ||| ||| ||| Sbjct 3353766 TGCCAACGGTATCCTAAATGTGTCGGCTGTTGACAAA 3353802 >seq93 Length=1971969 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| ||||| ||||| || ||||||| Sbjct 1913026 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAACGCCAAGCCACCAAAGATG 1912967 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || ||||| || ||||| || |||||||| || ||||| || Sbjct 1912966 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCTGCAGCTA 1912907 Query 550518 TTGCATATGGACTTGATAAA 550537 |||||||||| || || ||| Sbjct 1912906 TTGCATATGGCCTCGACAAA 1912887 >seq460 Length=216781 Score = 109 bits (120), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || || ||||| || ||||| || || || |||| Sbjct 117029 ATGCTGTAATCACAGTACCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACAAAGGATG 116970 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 116969 CTGGGACCATTTCTGGCCTCAATGTTCTCCGTATCATCAATGAACCAACTGCAGCTGCTA 116910 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 116909 TTGCTTATGG-CTTG 116896 >seq111 Length=1556485 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || || ||||| || || ||||| || ||||| | Sbjct 650506 ATGCTGTGGTGACGGTTCCTGCCTACTTCAACGACTCTCAGCGCCAAGCCACCAAAGACG 650447 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || |||||||| |||||||||||||| || ||||| ||||| Sbjct 650446 CCGGGACCATTTCTGGCCTAAATGTTCTGCGTATTATCAATGAGCCCACTGCCGCTGCCA 650387 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 650386 TTGCTTATGGCCTGGACAAA 650367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029133485900770