Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq80 271 1e-67 seq478 123 5e-23 seq3 96.9 6e-15 seq332 91.5 3e-13 >seq80 Length=2229659 Score = 271 bits (300), Expect = 1e-67 Identities = 842/1289 (65%), Gaps = 32/1289 (2%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||||| ||||||||| ||| | ||||| | |||| | | |||||| Sbjct 1868008 CCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 1868067 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 |||| ||||||||||||||| ||| ||||||| || |||||||| ||| Sbjct 1868068 GCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAAC 1868127 Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 || ||||| || ||| |||| |||| || || |||||||| || || |||||| Sbjct 1868128 GGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTG 1868187 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | | ||||||| | ||||| || || || || |||||| || || | ||| Sbjct 1868188 TGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTG 1868247 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC-AA 221664 || ||||| ||| ||||| ||| | ||| || | |||| | || Sbjct 1868248 TTCAGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTT------TGAAGTCATAA 1868301 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 || | | | |||| | ||| ||| || || | | |||||| ||||| Sbjct 1868302 GTCCGCTCTGGCGTGACGT------ACAT----GTTGAGAGCGATGGAGGCCAGATTACA 1868351 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 || ||||||||||| | | |||| |||| | || ||| || || |||||||||||||| Sbjct 1868352 AACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTT 1868411 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| | ||||| ||| | ||| ||||| ||||||||||| | Sbjct 1868412 GATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTA 1868471 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 || || || ||| ||| | | | | || || ||| || | ||| || ||| Sbjct 1868472 CGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCTG-CTGAGCCTTCA 1868530 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || || ||| || ||||| ||| || || || || ||| | ||||||| | Sbjct 1868531 CCACCCGCTTCACCCTCCCCTC---CTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCT 1868587 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | || | |||||| || || |||||| | |||||||||||||| ||||| | || Sbjct 1868588 CCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGT 1868647 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 || | || | || |||||| ||||| ||||||||||| || | ||||| || |||| Sbjct 1868648 TGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGG 1868707 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 | ||||||||| || |||| ||| |||| |||| || ||||| | ||| || Sbjct 1868708 CTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGT 1868767 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 ||||||||||||| || | || | || ||||| | |||||||| ||||| | || | Sbjct 1868768 GCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCGCCCTGGT-CAACG 1868826 Query 222204 TCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTG 222262 | ||| | |||| | | | || | || |||| ||||| || |||||| Sbjct 1868827 TAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTG 1868886 Query 222263 GTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCG 222322 ||||| ||||| ||| || || | | ||| | | | |||||| || || Sbjct 1868887 GTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCA 1868946 Query 222323 GCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCC 222382 ||| ||| || || | |||||| ||| || ||||| |||||||| || ||| Sbjct 1868947 GCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCG 1869006 Query 222383 TCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAAC 222442 || || | | ||||| || || |||| ||| | | ||| | |||||| || Sbjct 1869007 TCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAG 1869066 Query 222443 AGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACT 222502 || || || |||||| || || | | |||| ||| | ||||||||| | | | Sbjct 1869067 AGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCC 1869126 Query 222503 CTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG-GGGC-C 222560 | |||||| |||||| ||| | | |||||| ||||| ||| |||| | Sbjct 1869127 GCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGC 1869186 Query 222561 TC-TCCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCA 222619 || |||| || ||| || ||||| || || |||||||||||||||||| Sbjct 1869187 TCGGCCACCTTGCCGTTGACCCT---CAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCA 1869243 Query 222620 AAGTAGTTG-AGGTCAAAGTCTCTGCCGT 222647 ||| ||||| ||| ||| |||| | ||| Sbjct 1869244 AAGAAGTTGTAGGAGAAA-TCTCGGTCGT 1869271 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 || || |||||| | | |||| | | |||||| || |||| || |||||||| | Sbjct 1867687 GATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTC 1867746 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 | | || | || ||| ||| || | ||||| || || ||||| ||||| | | Sbjct 1867747 ATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTG 1867806 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| Sbjct 1867807 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAC 1867866 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || |||||||| || |||| |||||| ||||| Sbjct 1867867 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTT 1867898 >seq478 Length=201109 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| |||||||||||||| ||||| ||| |||||||| || Sbjct 176043 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 176102 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||| Sbjct 176103 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 176162 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 176163 ATCAGCAGAGACGAGG 176178 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| |||||||||||||| ||||| ||| |||||||| || Sbjct 188503 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 188444 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||| Sbjct 188443 TCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 188384 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 188383 ATCAGCAGAGACGAGG 188368 >seq3 Length=10095097 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || ||||| ||||||||||||||||| ||| || || ||||| Sbjct 6542965 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCTTTTGCT 6543024 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| ||||| ||| ||| || ||||||||| ||| | ||||| || || Sbjct 6543025 GCCATCTATTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTGACGTACTCCAATGAACTG 6543084 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 6543085 ATTAGCAGGGATGAGG 6543100 >seq332 Length=374033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||| ||||||||||| | ||| | ||| ||| ||| ||||| Sbjct 69943 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTACGCCTCGATC 70002 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| |||||||||||||||||||| ||| ||| |||||||| || || | ||||||| Sbjct 70003 GACTCATTGTTGCCCAGGATCTGAGCTGTGGAGGCTGTGGGCATCGGGGCTAACAGCAGA 70062 Query 221243 CTGTT 221247 ||||| Sbjct 70063 CTGTT 70067 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||||||||| || |||||||||| || || |||||||||| || |||||| || Sbjct 71375 CATGAAGAGATCTGGGATCCACAAGGCAAAGAACAGATCTCTGGCCCTCTGCTCTTCTTT 71434 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| || |||| |||||||| ||||| | ||| | |||||||||||||| || Sbjct 71435 GCCCGTGTTCCTCTTCAGTTCCAAAAATTCAAACACGTCCGAATGCCACGGCTCCAGGTA 71494 Query 222160 GACGGCCAGAGCGCCGGG 222177 | || | || ||||| Sbjct 71495 CATAGCAAACGCCCCGGG 71512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809120749120