Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq42 161 6e-34 seq93 113 3e-19 seq460 98.7 6e-15 seq10 86.0 4e-11 >seq42 Length=3555476 Score = 161 bits (178), Expect = 6e-34 Identities = 371/554 (67%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | || || |||||| | || || || ||| |||||| | ||||| || | | Sbjct 3352334 GAATATCTATCGGCATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACG 3352393 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||||||||| || || || || ||||| || || || || || || || | | Sbjct 3352394 GAAAAGTAGAAATCATCGCTAACGATCAAGGCAACAGGACGACTCCCAGCTACGTGGCCT 3352453 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || ||| || |||||||||||||| ||| | |||| ||| || || Sbjct 3352454 TTACAGACACAGAAAGGCTCATTGGAGATGCTGCCAAAAACCAAGTTGCCATGAACCCCA 3352513 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || ||||| || || | | ||||| | || ||||| || | |||| Sbjct 3352514 CCAACACGATCTTTGACGCCAAGCGGCTCATTGGGAGAAAGTTTGACGACGCGGTGGTCC 3352573 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | || || || | |||||||| ||||||||||||| ||| || || | | Sbjct 3352574 AGTCCGACATCAAACTCTGGCCTTTCAAGGTGATAAATGACAATGGGAAGCCTAAAGTCC 3352633 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| || ||||| || | || || | |||||||||||||| Sbjct 3352634 AGGTGGAATATA--AAGGGGAGACTAAGGCTTTCTGTCCAGAGGAGATTTCTTCAATGGT 3352691 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | | ||||||| | | | || ||| | | ||| ||||| | || | |||||| Sbjct 3352692 TCTGGTTAAAATGAGAGAGATTGCTGAG-GCCTTTCTGGGACAGAAGGTGTCAAATGCAG 3352750 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | ||||| || || || ||||| ||||| || || | ||||| || |||||||| || Sbjct 3352751 TCATTACGGTGCCTGCTTATTTCAATGACTCGCAGAGGCAAGCCACCAAAGATGCTGGCG 3352810 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || || || | | || || |||||||| ||||| || || |||| | Sbjct 3352811 TGATCTCTGGACTAAACATTCTGAGGATCATCAATGAACCCACAGCGGCAGCCATTGCCT 3352870 Query 474861 ATGGTCTTGATAAG 474874 | || || |||||| Sbjct 3352871 ACGGCCTGGATAAG 3352884 Score = 143 bits (158), Expect = 2e-28 Identities = 424/642 (66%), Gaps = 14/642 (2%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| | || ||||| ||||| || || || | |||| || |||||||| | Sbjct 3353168 TTGAGATCGACTCTCTATTTGAGGGTATCGACTTCTATACCTCAATCACAAGGGCACGTT 3353227 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 |||| || | || |||||||| ||| |||| | || || ||||| | | || Sbjct 3353228 TTGAGGAGCTCAACTCGGATCTCTTCAGAGGAACACTGGAGCCAGTTGAGAAGGCCCTGC 3353287 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 ||| |||| || || || || |||| ||||||||||||| || || || ||||| ||| Sbjct 3353288 AAGACGCTAAGCTGGATAAGTC-CAAGATCCATGAAATTGTCCTGGTTGGTGGTTCCACA 3353346 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 || || || ||||| |||| ||| || | | |||||||||||| || | || | Sbjct 3353347 AGGATACCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAATGGTAAAGAGCTGAACAA 3353405 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTAT 475844 || | || ||||||||||| || || ||||| ||||| ||||| || ||||| | || Sbjct 3353406 GAGCATCAACCCTGATGAAGCAGTGGCCTATGGTGCTGCAGTCCAGGCTGCTATCCTCAT 3353465 Query 475845 CAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTC 475902 | | || ||| ||||| | | || | | || | ||||| | || || || Sbjct 3353466 GGGCGACACCTCA---GAGAACGTCCAGGATTTGCTGCTGCTGGACGTGGCGCCCCTGTC 3353522 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 | || ||||||| | ||||| ||||||| ||||| | |||| || | || Sbjct 3353523 TCTGGGGATTGAAACCGCAGGAGGAGTTATGACCCCCCTTATCAAACGAAACACCACAAT 3353582 Query 475963 CCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 ||| || | | ||| | | || ||||| || || ||||| || | ||| Sbjct 3353583 CCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCTGGAGTACTG 3353640 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || || | | ||||||||||||| | || || || || || || || | ||| Sbjct 3353641 ATTCAGGTGTATGAAGGTGAAAGAGCCATGACCAAGGACAACAATCTGCTCGGGAGGTTT 3353700 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || |||||| || || |||||||| || || || || || || || || ||||| Sbjct 3353701 GAGCTCACAGGTATCCCGCCGGCTCCCAGGGGCGTGCCGCAGATAGAGGTAACCTTTGAC 3353760 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAA 476182 || ||||| || ||||| || ||||| | ||| ||| ||| Sbjct 3353761 ATCGATGCCAACGGTATCCTAAATGTGTCGGCTGTTGACAAA 3353802 >seq93 Length=1971969 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || ||||| || || || ||||| || ||||| ||||| || ||||||| Sbjct 1913026 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAACGCCAAGCCACCAAAGATG 1912967 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| | ||||| ||||| | ||||| ||||||||||| ||||| || || Sbjct 1912966 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCTGCAGCTA 1912907 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || || || Sbjct 1912906 TTGCATATGGCCTCGACAAAAA 1912885 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| ||||||||||||| | || || || ||||| | || || | ||| | || Sbjct 1910358 TCTATGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCCTGGGGAAATTTGAACTGA 1910299 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 ||||| || |||||||||||||| || ||||| ||||| || || ||||| || |||| Sbjct 1910298 CTGGTATACCACCTGCTCCCAGAGGCGTCCCTCAGATTGAGGTGACCTTTGACATCGATG 1910239 Query 476148 CAAATGGTATTCTTAATGT 476166 | ||||| || || ||||| Sbjct 1910238 CCAATGGAATCCTCAATGT 1910220 >seq460 Length=216781 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||||| || || || || || || || || ||||| ||||| || || || |||| Sbjct 117029 ATGCTGTAATCACAGTACCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACAAAGGATG 116970 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| || ||||||||||| ||||| || Sbjct 116969 CTGGGACCATTTCTGGCCTCAATGTTCTCCGTATCATCAATGAACCAACTGCAGCTGCTA 116910 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | || ||||| Sbjct 116909 TTGCTTATGGCTTGGACAAGAA 116888 >seq10 Length=6656597 Score = 86.0 bits (94), Expect = 4e-11 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| ||||| | | || || ||||| || | || || Sbjct 5404446 GTGGAGATCATTGCCAATGACCAGGGTAACCGCATCACCCCTTCATACGTGGCCTTCACC 5404387 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| ||||||||||| ||| ||||| | ||||| || | Sbjct 5404386 AGTGAGGGTGAGCGTCTGATTGGTGATGCTGCTAAGAATC-AGCTGACCTCTAACCCAGA 5404328 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || || | |||||||| |||||| ||||||| || | | | ||| ||||||| || Sbjct 5404327 GAACACCGTCTTTGATGCCAAAAGACTGATTGGCCGCACCTGGGGTGACTCCACTGTGCA 5404268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268047384119804