Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq80 154 2e-32 seq332 100 3e-16 seq3 91.5 2e-13 >seq80 Length=2229659 Score = 154 bits (170), Expect = 2e-32 Identities = 958/1502 (64%), Gaps = 62/1502 (4%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||| |||| | | || ||||||||| ||||| || | | Sbjct 1869183 CCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACGGACATCGACGCGGC 1869124 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||| || | |||| | | || ||||| ||||| | || ||||||| Sbjct 1869123 CATCGAGACGTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCT 1869065 Query 75330 TCAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||| || || || ||| | || ||| ||||||| |||||||| |||||| || || Sbjct 1869064 TCAACGCCGGGAC--CAACCGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGA 1869007 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||| ||| | || || || | || || | | |||| || | || || || | || Sbjct 1869006 CGACAGCATCGAGGGCATTTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 1868947 Query 75448 TGGGGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAAATCTCG---TAT-TCG 75501 ||| || || || | | | || | || | ||||| || | | || ||| Sbjct 1868946 TGGCGGCATCGGCGT-CGCGGTCA-GCTGCATCAGAGC-----AACCGGGAGCTACATCG 1868894 Query 75502 GGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || || || | || | || | | || ||||| | || | ||| ||| | Sbjct 1868893 CCGGCACCAACGGGAACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAACACTG 1868834 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTCGCAAGG----GGTCCATCGCGGTCTACTTGGAA 75616 | ||||| || | || | | ||| | |||| | || ||||| | ||| |||| Sbjct 1868833 CTCGCTACGTTGACCAGG-GCGGCAACAAAAGGCCCGGAGCCTTCGCGATGTACCTGGAG 1868775 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCA-ACCAAGGTGACGAAGA 75675 || ||||| ||| | | || ||||| ||| | || | | || || | |||| Sbjct 1868774 CCGTGGCACTTCGACGTGTTTGAATTCCTGGAGCT--GAAGAAGAACACGGGAA--AAGA 1868719 Query 75676 GGCTCGGTGT---AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 || | | | || || ||||| | |||||||||| || ||||| ||||||||||| Sbjct 1868718 GGAGCAGAGAGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCG 1868659 Query 75733 GGTTGAGGAGGGTGGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTC 75789 || |||| | ||| |||||||| | ||||| ||| || || || ||| Sbjct 1868658 AGT---GGAGAGCAACCAAGACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGA 1868602 Query 75790 CGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG 75848 ||| || | ||| ||||||||||| || ||||| | || || ||||||| || | Sbjct 1868601 CGAGTGCTG-GGGGGAGGAGTTTGAGAAGCTTTACACGACATACGAGAAGGAGGGGAGGG 1868543 Query 75849 CCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAG 75907 || ||| || || | | | | ||||| | || || || | || |||||||| Sbjct 1868542 TGAA-GCGGGTGGTGAAGGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAA 1868484 Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 || ||||| || || ||||| ||||| || || || |||| |||||| || || |||| Sbjct 1868483 ACCGGAACGCCGTACATGCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAAC 1868424 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA-CAGATAAGGA 76026 |||| || |||||| || || || |||||||| | | ||||||| ||| || || Sbjct 1868423 CTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAA-GA 1868365 Query 76027 TGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGAC 76086 ||| ||| ||||| ||| |||| || ||||| || | ||| |||| |||| Sbjct 1868364 CGAGGTGGCGGTTTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACGCCAGAG-- 1868307 Query 76087 TCGCACTTTTGATTATGAAAAACT-TCA--TGAAATCACAAAGATTGTTACCAAAAATCT 76143 || |||| ||| | ||||||| || || | || | || || ||||| || Sbjct 1868306 -CGGACTTATGACTTCAAAAAACTGGCATCTGTGACCAAAGTAATCGT---GAAAAACCT 1868251 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGC 76202 ||| ||||||| | || | || || || || || | | ||| || | || Sbjct 1868250 GAACAAGATCATTGAAATCAACTACTACCCGGTCCCCGAAGCCGAG-AGGTCCAACAAGC 1868192 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 | ||||| || ||||| | || || ||||| | || || | || || ||| || | Sbjct 1868191 GCCACAGGCCAATTGGAATCGGAGTCCAAGGCTTGGCAGACGCCTTCATCTTGATGCGTT 1868132 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 || | || || || || || | | || | || ||||| ||||| || Sbjct 1868131 ACCCGTTCGAAAGCCCCGAGGCGCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACT 1868072 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 |||| ||||||||||||| || || |||| | | | || |||| ||||| | | Sbjct 1868071 ACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACG 1868012 Query 76383 AGGGTTCTCCCGCGTCCCAAGGG--GTGCTTCAGTTTGATATGTGGGAAGGTGAAACC-A 76439 | || ||||| |||| |||| || || |||| || |||| ||| || ||| | Sbjct 1868011 AAGG--CTCCCCCGTCAGCAGGGGCGTCCTGCAGTACGACATGT-GGAGCAAGACACCGA 1867955 Query 76440 AGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 | | | |||||| | | || ||||| ||| | | || | | |||| Sbjct 1867954 CGGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACA 1867895 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 | || || |||| || ||||| || || ||||| || || ||| |||| || || || | Sbjct 1867894 GCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGT 1867835 Query 76560 GCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCA 76619 | | || | ||||| | ||||||||| | || |||| | || ||||| | Sbjct 1867834 CCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGA 1867775 Query 76620 TTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGA 76679 | |||||| ||||| | || ||| | | | ||| || || ||| | |||| |||| Sbjct 1867774 TCGTCAACCCCCACCTGCTGAAAGACATGACGGAGAGGGGGCTGTGGAGCGAGGAGATGA 1867715 Query 76680 AG 76681 || Sbjct 1867714 AG 1867713 >seq332 Length=374033 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || ||||| || || || |||||||| ||||| |||||||| Sbjct 71060 TGGTACGCCATCATCGAGTCGCAGACAGAAACGGGGACACCATACATGCTCTACAAGGAC 71001 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| | || |||| || ||||| | ||||| ||| Sbjct 71000 GCCTGCAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAATCTGTGC 70941 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||| || ||||||||||| | | |||||| Sbjct 70940 ACGGAAGTTGTAGAGTACACAAGTGAAGATGAG 70908 >seq3 Length=10095097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| ||| | || ||||| ||||||||| ||||||||||| || || || ||| || Sbjct 6542968 GAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTC-TTTTGCTGC 6543026 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 || |||||| | |||||| | || |||||||| ||||| | ||| |||||||| || Sbjct 6543027 CATCTATTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTGACGTACTCCAATGAACTGAT 6543086 Query 65196 TTCCCGAGATGAGG 65209 | | | ||||||| Sbjct 6543087 TAGCAGGGATGAGG 6543100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546684270240