Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3022 174 2e-37 seq258 174 2e-37 seq2375 170 2e-36 seq672 170 2e-36 seq60 170 2e-36 seq70 147 3e-29 seq190 134 2e-25 seq80 134 2e-25 seq461 98.7 1e-14 seq89 96.9 4e-14 seq3 91.5 2e-12 >seq3022 Length=5254 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||| || | | | || Sbjct 1566 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATTTCCCTGGAGGTGA 1625 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| |||||||| | ||||||| |||| | Sbjct 1626 TGGTGGATCGCTTGTTGTAATGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 1685 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1686 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 1745 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||||||||||||||||| Sbjct 1746 GCACCTGCTTGAGCACCTTGTAGA 1769 >seq258 Length=520730 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||| || | | | || Sbjct 10592 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATTTCCCTGGAGGTGA 10651 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| |||||||| | ||||||| |||| | Sbjct 10652 TGGTGGATCGCTTGTTGTAATGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 10711 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 10712 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 10771 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||||||||||||||||| Sbjct 10772 GCACCTGCTTGAGCACCTTGTAGA 10795 >seq2375 Length=8961 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||||||||||||||| | | | || Sbjct 6839 GCTTGGCCAGCTCTCCAGGCAGCAGGAGACGCACGGCGGTCTGGATCTCCCTGGAGGTGA 6780 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| |||||||| | ||||||| |||| | Sbjct 6779 TGGTGGATCGCTTGTTGTAATGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 6720 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 6719 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 6660 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||||||||||||||||| Sbjct 6659 GCACCTGCTTGAGCACCTTGTAGA 6636 >seq672 Length=104558 Score = 170 bits (188), Expect = 2e-36 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | ||||| ||||||||||||||||| | | | ||| ||| Sbjct 14651 GCCAGCTCCCCGGGCAGCAGGAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTG 14710 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||| ||| |||||||| | ||||||| |||| |||||| Sbjct 14711 GAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGATGTCG 14770 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | |||| ||||||||| ||| ||||||||| Sbjct 14771 TTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCCGGGTGCACC 14830 Query 1254528 TGCTTGAGCACCTTGTAGA 1254546 ||||| ||||||||||||| Sbjct 14831 TGCTTCAGCACCTTGTAGA 14849 >seq60 Length=2806165 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 1867873 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 1867932 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| | ||||||| |||| | Sbjct 1867933 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 1867992 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| ||| ||||||||| |||||||| Sbjct 1867993 TGTCGTTCACGAACGAGTTCATGATGCTCATCGCCTTAGAGGAGATGCCGGTGTCGGGGT 1868052 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1868053 GGACCTGCTTCAGCACCTTGTA 1868074 >seq70 Length=2359738 Score = 147 bits (162), Expect = 3e-29 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||| | Sbjct 1471150 TGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGG 1471209 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| ||||| ||| ||||||| | ||||||| || | |||| Sbjct 1471210 TGGAGCGCTTGTTGTAGTGAGCCAGGCGGGACGCCTCGGAGGCGATGCGCTCAAAAATGT 1471269 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 1471270 CGTTCACGAATGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGGA 1471329 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| | ||||||||| Sbjct 1471330 CCTGCTTCAACACCTTGTA 1471348 >seq190 Length=819561 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | | || || ||||| ||||||||||| | | | || Sbjct 803141 GCTTGGCTAGCTCCCCGGGTAGCAGGAGACGGACGGCTGTCTGGATCTCCCTGGAGGTGA 803082 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| || || ||| ||||||| | | ||||| |||| | Sbjct 803081 TGGTGGAGCGTTTGTTGTAGTGGGCTAGGCGGGAAGCCTCGGAGGCAATGCGCTCGAAGA 803022 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 803021 TGTCGTTGACGAACGAGTTCATGATGCTCATAGCCTTGGAAGAGATGCCAGTGTCGGGGT 802962 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 802961 GCACCTGCTTCAGCACCTTGTA 802940 >seq80 Length=2229659 Score = 134 bits (148), Expect = 2e-25 Identities = 207/290 (71%), Gaps = 18/290 (6%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| | || | |||||||| || | ||||| Sbjct 1868814 GCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTT 1868873 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGG 1630177 || | ||||||||||| || | |||| |||| || | ||| || | |||| Sbjct 1868874 CGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCT-GACCGCGA 1868932 Query 1630178 CAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGA 1630237 | |||||||||||| || || ||||| ||||| |||||||| || || |||||||| | Sbjct 1868933 C---GCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAA 1868989 Query 1630238 TGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGG 1630292 |||||||||| |||| | |||||| | | || ||||| ||| || | || ||| Sbjct 1868990 TGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCGG 1869048 Query 1630293 GTGCGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 || || |||||||||||||| || || | || ||||||| ||| Sbjct 1869049 TTG----GTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACT 1869094 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||| | || | ||||||| ||||||| | || || | Sbjct 1867727 TCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCC 1867786 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | ||||| | |||| |||||| Sbjct 1867787 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGC 1867846 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | ||||||||||| |||||| || || ||| | || || Sbjct 1867847 CCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGC 1867906 Query 1627475 CGTG 1627478 |||| Sbjct 1867907 CGTG 1867910 Score = 102 bits (112), Expect = 1e-15 Identities = 258/401 (64%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||| ||| |||||||||||| || | | || |||||||||||||| ||| | || Sbjct 1868383 ACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTC 1868442 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||| |||| ||||||||| |||| ||||| || |||||| | ||| | Sbjct 1868443 CTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATG 1868502 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNN 1628346 ||||| |||| | ||| | || ||| || | | | | |||| Sbjct 1868503 ATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTAT 1868562 Query 1628347 NNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGAC 1628406 ||||| || | || ||||||||| || ||||| |||| Sbjct 1868563 GTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCG 1868622 Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 ||||| | || |||||||| | || || | || ||| || ||||| || Sbjct 1868623 GGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATC 1868682 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 ||||| ||||| |||||||| | || | | |||||| || || |||||| || || Sbjct 1868683 CACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGC 1868742 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 || || | || | | |||| |||||||||||||||||| Sbjct 1868743 TCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTA 1868783 >seq461 Length=215341 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| |||| |||||| |||||||| | || ||| |||||| Sbjct 40044 CGTCATCTCCTTCGACGGCTCCTATGTCAACTACCGCCACCTGGCTCTGCTGTGCGACAC 39985 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||||||||| || ||||| |||||||||| ||| |||||||| Sbjct 39984 CATGACCTGCCGCGGCCACCTGATGGCCATCACGCGCCATGGCATCAACCGC 39933 >seq89 Length=2090648 Score = 96.9 bits (106), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| | |||||||||||| | ||| | || || Sbjct 1336339 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCTCACGGCGGTCTGCACCTCCCTGCTGGTGA 1336280 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||| ||| |||| | |||| || Sbjct 1336279 TGGTGGAGCGCTTGTTGTACTGAGCCAGCCGGGACGCCTCCGTGGCGATCCTCTCGAACA 1336220 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||| | ||| | || |||| || ||| ||| || | Sbjct 1336219 GGTCGTTCACGAACGAGTTCATAATGCTCATGGCTCTGCTGGAAATCCCCGTGTCCGGAT 1336160 Query 1254523 GCACCTGC 1254530 | |||||| Sbjct 1336159 GGACCTGC 1336152 >seq3 Length=10095097 Score = 91.5 bits (100), Expect = 2e-12 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAA 869274 ||||||||||||||||| | |||||| |||||| ||||||| ||| ||| ||||||||| Sbjct 6543065 AGGCCGGGCATGAGGCCTCTCTTCTTTAGCCAATAGATGGCAGCA-AAAGAGCCCGAGAA 6543007 Query 869275 AAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||| || || ||||| Sbjct 6543006 GAAGATGCCCTCCACAGCTGCAAA 6542983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106887015229141