Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq80 237 1e-57 seq23 104 2e-17 >seq80 Length=2229659 Score = 237 bits (262), Expect = 1e-57 Identities = 955/1483 (64%), Gaps = 41/1483 (3%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 1867806 GTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGA 1867865 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 ||| || ||||| ||||| || || |||| | ||||| ||| || Sbjct 1867866 CGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTC 1867925 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAA 138719 ||| ||| | ||||||||||| || | ||| | ||| ||||||| |||||||| | Sbjct 1867926 CTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAG 1867985 Query 138720 CATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 | ||| || |||| ||||||||||| ||||| || | ||| |||| Sbjct 1867986 GACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAG 1868045 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 |||| ||||||||| || || | ||||| || || || ||||| ||||||| Sbjct 1868046 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAG 1868105 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 | ||||||| ||| ||| |||| || | || |||| ||||| |||| ||||| Sbjct 1868106 CTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTG 1868165 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGG 138956 || || | ||| | || | |||||| || ||| || | ||||||| || || Sbjct 1868166 GACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGAC-CTCT--CGGCTTCGGGGACCGG 1868222 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 || ||||| | || ||||| ||||| | ||| ||||| || || || | |||| Sbjct 1868223 GTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGC 1868282 Query 139015 TTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 | | || || || || || || | || ||| ||||| ||| ||||| Sbjct 1868283 --CAGTTTTTTGAAGTCATAAGT--CCGCTCTGGCGT----GACGT--ACA----TGTTG 1868328 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATT 139134 | | || ||||| | || || |||||||| ||||| || | |||| || || | Sbjct 1868329 AGAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACC 1868388 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | |||| || || |||||||| || || | || || |||||||| || | ||| Sbjct 1868389 TCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTG 1868448 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAAT 139254 || || |||||||| ||||| ||||| || || |||||| || | ||| || ||| Sbjct 1868449 CACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCG 1868508 Query 139255 TTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTT 139312 | | | | | ||| | | || | | | | | | || |||||| | Sbjct 1868509 TACCAAAGCTGCTGAGCCTTCA--CCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCG 1868566 Query 139313 CGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 ||| || | || || || | | || | | |||| || || |||||| ||| | Sbjct 1868567 TGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---GAGCCCGGGACACTCGTCGG 1868623 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 ||||||| || ||||| | ||| || || ||| |||||||||| || || |||| Sbjct 1868624 GACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCC 1868683 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGT 139489 ||| ||| | | | || | || ||| || || ||| |||| |||| | Sbjct 1868684 ACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCT 1868743 Query 139490 TAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCC 139549 ||||| ||||| ||||| |||||| || ||||| || || || | || || || Sbjct 1868744 CCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCC 1868803 Query 139550 GT---TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCT 139606 | ||||| || || || |||| || ||| || ||| | || | || ||| || Sbjct 1868804 TTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGA 1868863 Query 139607 CCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCAT 139666 ||| ||| ||| | |||||||||| |||| || | |||| || | || Sbjct 1868864 CCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATG-CAG 1868922 Query 139667 GT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGT 139724 | || || |||||| ||||| | ||||||| || | |||| | || | | || Sbjct 1868923 CTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACT-GCTTCAGGGT 1868981 Query 139725 CTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTG 139784 ||||| || || ||||||||||| | ||| | || ||| ||||| || || || Sbjct 1868982 GTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 1869041 Query 139785 CGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCG 139843 || | || || ||||| || || || || ||||| ||||| || || | | | Sbjct 1869042 TGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCT-G 1869100 Query 139844 ACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGA 139903 ||| || | |||||| |||||||| | || ||| | |||||||| || || || | Sbjct 1869101 ACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACA 1869160 Query 139904 CTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAAC 139963 | | ||| ||||| || || || ||||||||| ||| | || | |||||| Sbjct 1869161 CCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGG 1869220 Query 139964 CGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | ||| || |||||| | |||||| | | ||| |||||| Sbjct 1869221 AGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATC 1869263 >seq23 Length=4589928 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 3279354 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAGT 3279413 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 3279414 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 3279473 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 3279474 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 3279533 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 3279534 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 3279568 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 3279126 ATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAACCAAGT 3279185 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3279186 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3279245 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || |||||| Sbjct 3279246 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTATAAC 3279305 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || ||||| || || || |||| Sbjct 3279306 ATCCAGAAAGAATCCACCCTCCATCTTG 3279333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 3277162 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 3277221 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3277222 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3277281 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 3277282 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 3277341 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| |||| |||| Sbjct 3277342 ATCCAGAAGGAGTCAACCCTTCACCTGGTCCTGCG 3277376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880318308440