Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23 127 2e-24 >seq23 Length=4589928 Score = 127 bits (140), Expect = 2e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||| || | ||| || ||||||||||| || |||||||| || | Sbjct 3279352 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGAC 3279293 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 3279292 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3279233 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | |||||| |||| || Sbjct 3279232 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACC 3279173 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799 ||||| || || || || ||||| | |||||| ||||| |||||||| || | || |||| Sbjct 3279172 TCAAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATGTTTACACCTATG 3279113 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || || ||||||| |||||| |||| || || ||||||||||| || ||||| || || Sbjct 3279583 TGCCCCCCCCTCAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 3279524 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | |||||| ||| || || || ||||| ||| | |||| || ||||| || || Sbjct 3279523 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 3279464 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || || || ||||| || | || || || | || | |||||| | || Sbjct 3279463 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 3279404 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || ||||| | ||| || ||||| |||||||| Sbjct 3279403 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204772698293