Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq42 219 3e-51 seq93 122 7e-22 seq460 93.3 3e-13 seq10 87.8 1e-11 >seq42 Length=3555476 Score = 219 bits (242), Expect = 3e-51 Identities = 964/1509 (64%), Gaps = 20/1509 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| || || || || || || | |||| || ||| ||| | || | |||||| || Sbjct 3353838 ATTGGTGATTGTGATTTTGTTCGTTTTGCCGGTGCTTTTGTCAACAGCCGACACATTTAG 3353779 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||| |||||||| | ||||| || || || || || || || || || |||| || Sbjct 3353778 GATACCGTTGGCATCGATGTCAAAGGTTACCTCTATCTGCGGCACGCCCCTGGGAGCCGG 3353719 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| ||| | | ||| | || || ||| || || || || | || ||| Sbjct 3353718 CGGGATACCTGTGAGCTCAAACCTCCCGAGCAGATTGTTGTCCTTGGTCATGGCTCTTTC 3353659 Query 281560 ACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 ||| || | | || || |||| || ||| || |||||||| || || | || | || Sbjct 3353658 ACCTTCATACACCTGAATCAGTA-CTCCAGGCTGGTTATCTGAGTATGTGGAGAAGA-TC 3353601 Query 281619 TGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 || | | || || ||||| ||||||| | |||| |||||||| || || Sbjct 3353600 TGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGTTTGATAAGGGGGGTCATAACTCCTCCT 3353541 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || ||||| | || ||||| || || | || || | || | | || || | || Sbjct 3353540 GCGGTTTCAATCCCCAGAGACAGGGGCGCCACGTCCAGCAGCAGCAAATCCTGGACGTTC 3353481 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || || | || | || ||||| || || | ||||||||||| || || |||||| Sbjct 3353480 TCTGAGGTGTCGCCCATGAGGATAGCAGCCTGGACTGCAGCACCATAGGCCACTGCTTCA 3353421 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 281856 ||||| || | | | || || | ||||||||| || || | || |||| || | Sbjct 3353420 TCAGGGTTGATGCTCTTGTTCAGCTCTTTACCATTAAAGAAGTCCTGTAAGAGCTTCTGG 3353361 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | || || || | | || || ||||| | ||||||||||| | || || ||||| Sbjct 3353360 -ATTTTGGGTATCCTTGTGGAACCACCAACCAGGACAATTTCATGGATCTTGGACTTATC 3353302 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 ||| || | || | | || ||||| || || || |||| || | || || Sbjct 3353301 CAGCTTAGCGTCTTGCAGGGCCTTCTCAACTGGCTCCAGTGTTCCTCTGAAGAGATCCGA 3353242 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || || || || || || ||| | || || || || || || || Sbjct 3353241 GTTGAGCTCCTCAAAACGTGCCCTTGT--GATTGAGGTATAGAAGTCGATACCCTCAAAT 3353184 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | ||| || | ||||| ||| |||| || || | | | || || | ||| Sbjct 3353183 AGAGAGTCGATCTCAATGCTAGCCTGAGAGCTGGAGGACAAGGTCCTCTTTGCTCTCTCA 3353124 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATT 282152 || ||||||| || || || | ||| || | ||| | | || | || | || Sbjct 3353123 CAGGCTGTCCGCAGCCTCCGCACTGCTCTT--TTATTCTGGGCGATGTCCTTCTTGTGTT 3353066 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 ||||||| || || |||||| | | || | ||||| ||||| || || || || | Sbjct 3353065 TTCTCTTAAACTCCTCAACAAAGTGACTGACCATCCGATTGTCAAAGTCCTCCCCACCGA 3353006 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | || | |||| || ||| | |||| || | ||||| |||| | || | | Sbjct 3353005 GGTGTGTGTCCCCTGCTGTGGCTTTCACTTCAAATATGCCATCCTCAATGGTCAGGATGG 3352946 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 || || ||| || ||||| | ||| || || || ||||| ||| |||| | Sbjct 3352945 ACACGTCGAAGGTGCCTCCACCAAGATCGAAGATGAGCACATTGCGCTCTCC-TCTT--T 3352889 Query 282333 TT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||||| || || || |||| || || || || |||||||| || || |||| || Sbjct 3352888 TCCCCTTATCCAGGCCGTAGGCAATGGCTGCCGCTGTGGGTTCATTGATGATCCTCAGAA 3352829 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 || || |||| || || |||||||| |||||||| || || || || || |||| Sbjct 3352828 TGTTTAGTCCAGAGATCACGCCAGCATCTTTGGTGGCTTGCCTCTGCGAGTCATTGAAAT 3352769 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 | ||||| || ||||| || |||| || || | | ||| | | | || || | | Sbjct 3352768 AAGCAGGCACCGTAATGACTGCATTTGACACCTTCTGTCCCAGAAAGGCCTCAGCAATCT 3352709 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT 282569 | |||||||| | || |||||| ||||| | |||||| | | ||| | || Sbjct 3352708 CTCTCATTTTAACCAGAACCATTGAAGAAATCTCCTCTGGACAGAAAGCCTTAGTCTCCC 3352649 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 || |||| || | | | || || | |||| || || || || ||||| Sbjct 3352648 CTTTATATTCCACCTGGACTTTAGGCTTCCCATTGTCATTTATCACCTTGAAAGGCCAGA 3352589 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 ||| || || || || || ||| | ||| | ||| ||||| | || || || | Sbjct 3352588 GTTTGATGTCGGACTGGACCACCGCGTCGTCAAACTTTCTCCCAATGAGCCGCTTGGCGT 3352529 Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||||| || || | ||| |||| | |||||| ||||||||||| || Sbjct 3352528 CAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTTTTGGCAGCATCTCCAATGAGCC 3352469 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||||| |||||||| | || || ||||| || | || |||||||| || || | Sbjct 3352468 TTTCTGTGTCTGTAAAGGCCACGTAGCTGGGAGTCGTCCTGTTGCCTTGATCGTTAGCGA 3352409 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| || | || | ||||| |||||| | || || || | ||||| Sbjct 3352408 TGATTTCTACTTTTCCGTGCTGGAAAACACCAACACAAGAGTAGGTGGTGCCCAGATCAA 3352349 Query 282870 TACCAATAG 282878 | || |||| Sbjct 3352348 TGCCGATAG 3352340 >seq93 Length=1971969 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||| ||||| || ||||||||||| || | || ||| Sbjct 1912885 TTTTTGTCGAGGCCATATGCAATAGCTGCAGCTGTGGGTTCATTAATGATACGCAGCACA 1912944 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| ||| |||| |||||||| |||||||| | ||| || || || || || Sbjct 1912945 TTGAGACCAGAGATTGTTCCAGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTAA 1913004 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || ||||| |||| Sbjct 1913005 GCAGGAACTGTGATAACTGCAT 1913026 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| || || ||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 1910219 CACATTGAGGATTCCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGGACGCCTCT 1910278 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 |||||||||| || || || | |||| | ||||| ||||||| || || || | Sbjct 1910279 GGGAGCAGGTGGTATACCAGTCAGTTCAAATTTCCCCAGGATATTATTGTCCTTGGTCAT 1910338 Query 281551 TTTTCGTTCACCCTC 281565 || |||||| || Sbjct 1910339 GGCTCTTTCACCTTC 1910353 >seq460 Length=216781 Score = 93.3 bits (102), Expect = 3e-13 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| |||||| |||||||||||||| || || | | |||||| || | Sbjct 116896 CAAG-CCATAAGCAATAGCAGCTGCAGTTGGTTCATTGATGATACGGAGAACATTGAGGC 116954 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 ||| ||| | || ||||| || ||||| || | || || ||||| || || ||||| | Sbjct 116955 CAGAAATGGTCCCAGCATCCTTTGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGTA 117014 Query 282459 CAGTAATAACGGCATCTGTT 282478 | || || || |||| |||| Sbjct 117015 CTGTGATTACAGCAT-TGTT 117033 >seq10 Length=6656597 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || ||||| || ||||||| || || | ||||||||| |||| |||||||||||||| Sbjct 5403806 GGCTCATTGATGATTCTCATGACGTTCAAACCAGCAATGGTTCCAGCATCTTTAGTGGCC 5403865 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || | || | ||||||||| || ||||| || || | ||||||| ||| || Sbjct 5403866 TGGCGCTGAGCATCGTTAAAGTAGGCAGGCACCGTGACTACGGCATTTGTAAC 5403918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740479528686498