Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-13 seq15 86.0 1e-11 >seq13 Length=6456249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | || | | | ||||| || ||||||||||| ||| Sbjct 57186 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGATACGGTCTTTTTCATACTGAGG 57245 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTT 58497 || ||||| || || || ||||| || ||||| || ||||| | ||| ||||| Sbjct 57246 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACAATGTT 57298 >seq15 Length=5448219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||| || |||| | |||||||| | | || || || || ||||| | || ||||| Sbjct 3441938 GATGGCAGGAGCTCTGTGGTGGTATTTCGTCTCCAAGGGCATCGAATATCTGGACACAGT 3441997 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||| || || |||||||| || || || |||| ||| || ||||| || || || | Sbjct 3441998 GTTTTTTATCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTG 3442057 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 || ||||| || | | ||| | || || || ||| | |||||||| ||| Sbjct 3442058 CACCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACAG 3442109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903376497717280