Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq80 379 2e-100 seq23 129 6e-25 seq332 104 2e-17 >seq80 Length=2229659 Score = 379 bits (420), Expect = 2e-100 Identities = 1014/1536 (66%), Gaps = 34/1536 (2%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || | ||| ||||| |||| ||| || | || || | |||||| || | | Sbjct 1867768 TTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 1867827 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || | |||||||||||||||| ||||| || || | ||||||||||| ||| | | Sbjct 1867828 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGC 1867887 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| ||| | || ||| | || || || |||||| | ||||||||| Sbjct 1867888 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1867947 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || || ||||||| | ||||||||||||||||||| | ||| | ||| ||||| | Sbjct 1867948 AGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAG 1868007 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559 || ||||||| ||| || ||| || | || ||||| |||||||||||||| || ||| Sbjct 1868008 CCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 1868067 Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTAC 148619 ||||||| || ||||| || || ||||||||||| |||| ||||||| || Sbjct 1868068 GCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAAC 1868127 Query 148620 GGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGG 148679 || ||||| | | || ||||| || | ||| || || || | ||||| |||| | Sbjct 1868128 GGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTG 1868187 Query 148680 TGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGGTCGATGATC 148736 || ||||||| | | || || || ||| |||| |||| || |||||| Sbjct 1868188 TGGCGCTTGTTGGA---CCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATC 1868244 Query 148737 TTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCGCAGCAATTCAAAATCGTACTT 148795 |||| || || ||| | || || || | ||| ||| || || || || | Sbjct 1868245 TTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGC-CAGTTTTTTGAAGTCATAAGT 1868303 Query 148796 GTCATCT------ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGT 148849 ||| ||| | ||| ||| | ||||| ||||| ||||| || || ||| Sbjct 1868304 CCGCTCTGGCGTGACG-TACAT--GTTGAGAGCGATGGAGGCCAGATTACAAACCGCCAC 1868360 Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || || | ||||||| |||| ||| | |||||| |||||||| ||||| ||| Sbjct 1868361 CTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 1868420 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| || Sbjct 1868421 CAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCC 1868480 Query 148970 AGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026 |||||| ||||| || | || | ||| | || | ||| || ||| | | Sbjct 1868481 GGTTTCCGTCTGCGACTCGATGATGGCGTACCAA---AGCTGCTGAGCCTTCACCACCCG 1868537 Query 149027 CTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCA 149086 || | ||||||| ||||||| || || ||| ||| ||| |||| || |||| Sbjct 1868538 CTTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCA 1868597 Query 149087 ATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACAC 149146 |||||||| ||||| |||| || || ||||| || ||||| | || | ||| Sbjct 1868598 CTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCAC 1868657 Query 149147 GCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAG 149204 |||||||| ||||| ||||| | ||| || ||||| | |||||| | || | ||| Sbjct 1868658 TCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGC-- 1868715 Query 149205 TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGC 149264 || || ||| |||| ||| | || | || | ||| |||||||||| Sbjct 1868716 TCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGC 1868775 Query 149265 TCAATGTACACCGCGAGCGC----GCCCTTGCGCTTGCCGCCCTGGTCGACGTGGCGCAC 149320 || | ||||| ||||| || | |||| | |||||||||||||| |||| ||| | Sbjct 1868776 TCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG-TTGCCGCCCTGGTCAACGTAGCGAGC 1868834 Query 149321 CATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCT 149380 ||||||| | |||| | ||| || | | || | | | ||||| || | Sbjct 1868835 AGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGC 1868894 Query 149381 AATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTT 149440 ||| || ||| |||| | | || ||||||||||||||| || | || Sbjct 1868895 GATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTT 1868954 Query 149441 TGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCAT 149500 || ||| ||||| | || || ||| |||||||||||||||||| ||||| Sbjct 1868955 GGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCAT 1869014 Query 149501 GGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGG 149560 || ||||| ||||| | ||| || || || ||||| ||| | ||| || Sbjct 1869015 GGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGG 1869074 Query 149561 GCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA-GCACGCGGTCCA 149619 | |||||| || || | |||| || || | ||||| ||||| | ||| ||| | Sbjct 1869075 GGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGC-GTCGA 1869133 Query 149620 TGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCA 149679 |||| || ||||| || | | || | ||| ||||| |||||||| ||||| |||| Sbjct 1869134 TGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCA 1869193 Query 149680 CTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGT 149739 | ||| | | |||| ||| | || || |||||| | |||||| | |||| Sbjct 1869194 CCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGT 1869253 Query 149740 AGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 || || || ||| ||| | ||||| | || || Sbjct 1869254 AGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGA 1869289 >seq23 Length=4589928 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 3279551 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 3279493 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 3279492 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 3279433 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || || || || | Sbjct 3279432 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGG 3279373 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 3279372 TCTTGACAAAGATCTGCATG 3279353 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 3277359 GGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 3277301 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| |||||||| |||||| || Sbjct 3277300 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 3277241 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || || || || | Sbjct 3277240 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 3277181 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 3277180 TCTTGACAAAGATCTGCATG 3277161 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || || || || || ||| | | | || || |||| Sbjct 3279329 ATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 3279271 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || |||||||| |||||||| ||||| Sbjct 3279270 GCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCT 3279211 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||| | || ||||| || | ||||| ||| || || | Sbjct 3279210 TGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATGGTCTTCCCAG 3279151 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| || || ||||||||| Sbjct 3279150 TGAGGGTTTTGACAAAGATCTGCATG 3279125 >seq332 Length=374033 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| | || | ||||||||||||| ||||||| ||||| ||| | || | Sbjct 70922 TGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGT 70981 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||||||||| |||||||| ||| || ||||| ||||| Sbjct 70982 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGCG 71041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402230598520