Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 >seq7 Length=8378829 Score = 150 bits (166), Expect = 2e-31 Identities = 295/431 (68%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 |||||||||| || ||||| ||||||||||| || || ||| |||| | |||||| Sbjct 3793995 CACCATCTCTCTGTTTGTCTTGAGGGGAAAGTCTGTCCCACAGGTGTTAAGCAGATATTT 3794054 Query 162702 CCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| || |||| | | |||||||| | ||||||||||| |||||||| | Sbjct 3794055 CCACGGCACA-TGAGACTTCAGCAGATCCTCCATGCAGTTCAGATCTGCCTGGACTCTGG 3794113 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || | ||| | || | || |||||| || | ||| || || | Sbjct 3794114 ACCAAGAAGCATATAGGACATTTTCTATTTTACTGGCGATGAATATATTAGGAAAGCAGG 3794173 Query 162821 AAACTATCCCCATCACGGC-CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| ||| |||| || | ||| | ||| | |||| ||| || |||||| Sbjct 3794174 AAACTATACCCTTCACAGCTCTCTGATATTC-CGGAGGGGATTTCTGATCCACATGTACG 3794232 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | |||||||| || || || || | || | || ||| |||||||| ||||| Sbjct 3794233 CAGTAGATGTTCTGAGGAGCATAAATAGCTCGTAGGAGTCGCTCAAACATCTCAATCTTC 3794292 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCT 162999 | || | ||| ||||| | || || ||||| | | |||||| ||| |||| | || Sbjct 3794293 TCATGGATCACCATAGAGAATGCAATAGGGAAGTTATTCTCCTCCTCACTAAGAGGCACT 3794352 Query 163000 GTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAGGAC 163059 |||| ||| | | || ||| | | || ||||||||||| || ||| | |||| | Sbjct 3794353 GTAATGTAGCTCCTGTTCCTAATGTAAGCTGCACAGTCCTCTGTAGCGTTGATGTAGAAG 3794412 Query 163060 TCCGCGGTCAA 163070 ||| | | ||| Sbjct 3794413 TCCTCAGACAA 3794423 Score = 134 bits (148), Expect = 2e-26 Identities = 255/370 (69%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 |||||||||| || ||||| | ||||||||| || || ||| |||| | |||||| Sbjct 3797575 CACCATCTCTCTGTTTGTCTTGATGGGAAAGTCTGTCCCACAGGTGTTAAGCAGATATTT 3797634 Query 162702 CCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| || |||| | | ||| |||| | |||||||||||| |||||||| | Sbjct 3797635 CCACGGCACA-TGAGACTTCAGCAGGTCCTCCATACAGTTCAGATCTGCCTGGACTCTGG 3797693 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| ||||| || ||||| | || || |||||| || ||||| || || | Sbjct 3797694 ACCAAGACGCATAAACGACACGTTCTGTTTTACTGGCGATGAATACATTAGGAAAGCAGG 3797753 Query 162821 AAACTATCCCCATCACGGC-CAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTA 162877 ||||||| ||| | || || | ||| | || || | |||| ||| || |||| Sbjct 3797754 AAACTATACCCTTTACAGCTCTCTGATATTCCAAAGGA---GATTTCTGATCCACATGTA 3797810 Query 162878 CGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCT 162937 ||||||| | |||||||| || || || || | || | || ||| |||||||| |||| Sbjct 3797811 CGCAGTAGATGTTCTGAGGAGCATAAATAGCTCGTAGGAGTCGCTCAAACATCTCAATCT 3797870 Query 162938 TATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACC 162997 | | || | ||| ||||| | || || ||||| | | |||||| ||| |||| | Sbjct 3797871 TCTCATGGATCACCATAGAGAATGCAATAGGGAAGTTATTCTCCTCCTCACTAAGAGGCA 3797930 Query 162998 CTGTAAAGTA 163007 |||||| ||| Sbjct 3797931 CTGTAATGTA 3797940 Score = 134 bits (148), Expect = 2e-26 Identities = 255/370 (69%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 |||||||||| || ||||| | ||||||||| || || ||| |||| | |||||| Sbjct 3800855 CACCATCTCTCTGTTTGTCTTGATGGGAAAGTCTGTCCCACAGGTGTTAAGCAGATATTT 3800914 Query 162702 CCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| || |||| | | ||| |||| | |||||||||||| |||||||| | Sbjct 3800915 CCACGGCACA-TGAGACTTCAGCAGGTCCTCCATACAGTTCAGATCTGCCTGGACTCTGG 3800973 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| ||||| || ||||| | || || |||||| || ||||| || || | Sbjct 3800974 ACCAAGACGCATAAACGACACGTTCTGTTTTACTGGCGATGAATACATTAGGAAAGCAGG 3801033 Query 162821 AAACTATCCCCATCACGGC-CAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTA 162877 ||||||| ||| | || || | ||| | || || | |||| ||| || |||| Sbjct 3801034 AAACTATACCCTTTACAGCTCTCTGATATTCCAAAGGA---GATTTCTGATCCACATGTA 3801090 Query 162878 CGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCT 162937 ||||||| | |||||||| || || || || | || | || ||| |||||||| |||| Sbjct 3801091 CGCAGTAGATGTTCTGAGGAGCATAAATAGCTCGTAGGAGTCGCTCAAACATCTCAATCT 3801150 Query 162938 TATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACC 162997 | | || | ||| ||||| | || || ||||| | | |||||| ||| |||| | Sbjct 3801151 TCTCATGGATCACCATAGAGAATGCAATAGGGAAGTTATTCTCCTCCTCACTAAGAGGCA 3801210 Query 162998 CTGTAAAGTA 163007 |||||| ||| Sbjct 3801211 CTGTAATGTA 3801220 Score = 118 bits (130), Expect = 1e-21 Identities = 250/368 (68%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 |||||||||| || ||||| | ||||||||| || || ||| |||| | |||||| Sbjct 3805972 CACCATCTCTCTGTTTGTCTTGATGGGAAAGTCTGTCCCACAGGTGTTAAGCAGATATTT 3806031 Query 162702 CCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| || |||| | | ||| || | | |||||||||||| |||||||| | Sbjct 3806032 CCACGGCACA-TGAGACTTCAGCAGGTCTTCCATACAGTTCAGATCTGCCTGGACTCTGG 3806090 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || | || || || || || |||||| || ||||| || || | Sbjct 3806091 ACCAAGAAGTATATACAACATGTTCTGTTTTACTGGCGATGAATACATTAGGAAAGCAGG 3806150 Query 162821 AAACTATCCCCATCACGGCCAG-TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| ||| |||| ||| ||| | ||| | |||| ||| || |||||| Sbjct 3806151 AAACTATACCCTTCACAGCCCTCTGATATTG-CGGAGGGGATTTCTGATCCACATGTACG 3806209 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | |||||||| || || || || | || | || ||| |||||||| ||||| Sbjct 3806210 CAGTAGATGTTCTGAGGAGCATAAATAGCTCGTAGGAGTCGCTCAAACATCTCAATCTTC 3806269 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCT 162999 | || | ||| ||||| | || || ||||| | | |||||| ||| |||| | || Sbjct 3806270 TCATGGATCACCATAGAGAATGCAATAGGGAAGTTATTCTCCTCCTCACTAAGAGGCACT 3806329 Query 163000 GTAAAGTA 163007 |||| ||| Sbjct 3806330 GTAATGTA 3806337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409780980800