Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq80 269 3e-67 >seq80 Length=2229659 Score = 269 bits (298), Expect = 3e-67 Identities = 971/1494 (65%), Gaps = 46/1494 (3%) Strand=Plus/Plus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | ||| | ||||| || ||||| | || ||||| |||| || || Sbjct 1867813 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTG 1867872 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 ||||| ||||| || || || | || |||| ||| || ||||||| Sbjct 1867873 GGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 1867932 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 || || ||||||||||| || || ||| | |||||||||||||||| || || || Sbjct 1867933 AGCTT-CCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCC 1867991 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCAC 147175 | ||| |||| ||| || |||| |||| ||| || | ||| ||| || | Sbjct 1867992 CCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGC 1868050 Query 147176 AGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 |||| ||||| || || | ||||| ||||| || || || |||| || | || Sbjct 1868051 AGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCG 1868110 Query 147236 CTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATAC 147295 | || ||| ||| | || ||||| | | ||||| || ||||| || |||| | Sbjct 1868111 CCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTC 1868170 Query 147296 CGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGT 147355 ||| || || || | || | |||| | || || | | || |||| || Sbjct 1868171 CGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGT 1868230 Query 147356 TGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCT 147415 || ||||| |||||||| ||||| ||| | ||||| || | | | ||||| | Sbjct 1868231 TGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTT 1868290 Query 147416 CGAAATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGA 147474 ||| |||||||||| ||| || |||||| || ||| | ||||| || |||||| Sbjct 1868291 TGAAGTCATAAGTCCGCTCTGGCGTGACGTAC--AT--GTTGAGAGCGATGGAGGCCAGA 1868346 Query 147475 TTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTG 147534 || || || ||| ||| || | | |||||| ||||| || | ||||||||||||| Sbjct 1868347 TTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTG 1868406 Query 147535 CATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGC 147594 || || ||| |||| || ||||||||||| |||| ||||||||||||||| ||||| Sbjct 1868407 CACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGC 1868466 Query 147595 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGC 147651 |||||||| ||||| || |||| || | ||| ||| | || | ||| Sbjct 1868467 ATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAA---AGCTGCTGA 1868523 Query 147652 GC--TC-GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 || || |||||||| | | ||||| || ||||| | ||| | | |||| Sbjct 1868524 GCCTTCACCACCCGCTTC---ACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCA 1868580 Query 147709 AACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 ||||| || || |||| ||| | || |||||||||| | ||||||||||| ||||| Sbjct 1868581 AACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCAG 1868640 Query 147769 ATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGA 147828 | || | || || ||| ||||| || || | |||||| ||||| | || Sbjct 1868641 TCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGG 1868700 Query 147829 TCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGA 147886 || | || || ||| ||||| ||| |||| |||| | || | | | | Sbjct 1868701 TCCCTGGCTCTCTGC--TCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAACA 1868758 Query 147887 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCAC----CTTTACGCTTTCCGCCC 147942 |||| |||||| || || | ||| | || | || | | || | || |||||| Sbjct 1868759 CGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG-TTGCCGCCC 1868817 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 ||||| || | ||| | ||||||| | || | || |||||| ||| ||| ||| Sbjct 1868818 TGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGAG 1868877 Query 148003 GTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTC----GCACTTCGTGCACGTTAAC 148058 | ||||||||| ||| | ||| ||| |||| ||| | | | || || Sbjct 1868878 TTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCT-GACCGCG---AC 1868933 Query 148059 GCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCC 148118 ||| |||||||| || | || || ||| ||||| | || || ||| ||||| Sbjct 1868934 GCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCC 1868993 Query 148119 GTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--C 148176 ||||||||||||| ||| | | | |||| || || ||| || || ||| Sbjct 1868994 CTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG---CCGGTT 1869050 Query 148177 GTTCCCGCCG-AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCG 148235 | ||||| || ||| ||||| || ||||| || ||| | || | || || | Sbjct 1869051 GGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTT 1869110 Query 148236 ATACGTCTCAATAGCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294 |||||||| || || | ||||||| |||| ||||| || || | || || | ||||| Sbjct 1869111 GTACGTCTCGATGGCCGCGTCGATGTCCGTC-CCGTGGATCCCAACCGACACCCTCATGA 1869169 Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354 |||||||||| || || ||||| || | ||||| | | || ||||| || | Sbjct 1869170 GCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCA 1869229 Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | || ||| | |||||| | ||||| |||||| | ||||| ||||||| Sbjct 1869230 GAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCG 1869283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476592892172280