Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq83 98.7 3e-17 seq40 98.7 3e-17 seq35 98.7 3e-17 seq33 98.7 3e-17 seq2 96.9 1e-16 seq676 87.8 6e-14 seq2669 84.2 7e-13 seq157 80.6 8e-12 seq109 80.6 8e-12 seq11 80.6 8e-12 >seq83 Length=2191521 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 240451 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 240392 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 240391 CCGGGTTTCGGC 240380 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 317377 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 317318 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 317317 CCGGGTTTCGGC 317306 >seq40 Length=3616124 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3611379 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3611438 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3611439 CCGGGTTTCGGC 3611450 >seq35 Length=3987237 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2672042 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2671983 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2671982 CCGGGTTTCGGC 2671971 >seq33 Length=4053639 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2727822 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2727881 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2727882 CCGGGTTTCGGC 2727893 >seq2 Length=11400209 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1386005 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1385946 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 1385945 CTGGGTTT 1385938 >seq676 Length=103707 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||| | Sbjct 99813 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTAGTTCGAT 99754 Query 2828 CCCGGGCTTCAGC 2840 || || ||| || Sbjct 99753 CCTTGGTTTCGGC 99741 >seq2669 Length=7217 Score = 84.2 bits (92), Expect = 7e-13 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||| Sbjct 799 GGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTAGTT 744 >seq157 Length=1024412 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| || ||||| ||||||||| ||||||||||||||| ||||||||||||| | Sbjct 1016733 GGCCGAAATACCTCAGCTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTTGAT 1016674 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 1016673 CCCGGGTTT 1016665 >seq109 Length=1570503 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||||||| ||||| ||||| ||| |||||||||||||||| Sbjct 63904 GGCCGAAATAGCTCAGTTGGGAGAGTGTTAGATTGAAGCTCTGAAGGTCCCTGGTTCAAT 63845 Query 2828 CCCGGGCTT 2836 || ||| || Sbjct 63844 CCTGGGTTT 63836 >seq11 Length=6612770 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| | ||||||||||||| |||| ||||||||| | | Sbjct 4030852 GCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGACCCTGGTTCGATC 4030911 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4030912 CCGGGTTTCGGC 4030923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849067280085