Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3022 188 1e-41 seq258 188 1e-41 seq2375 185 1e-40 seq672 183 4e-40 seq60 179 5e-39 seq70 161 1e-33 seq190 145 1e-28 seq89 120 4e-21 seq80 120 4e-21 seq461 89.7 7e-12 seq3 87.8 3e-11 >seq3022 Length=5254 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| Sbjct 1769 TCTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 1716 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| | |||||||| | Sbjct 1715 TGAGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCC 1656 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| ||| ||| | | | || |||||||||||||||| Sbjct 1655 GCCTGGCTCATTACAACAAGCGATCCACCATCACCTCCAGGGAAATCCAGACCGCCGTGC 1596 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 1595 GCCTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1547 >seq258 Length=520730 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| Sbjct 10795 TCTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 10742 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| | |||||||| | Sbjct 10741 TGAGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCC 10682 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| ||| ||| | | | || |||||||||||||||| Sbjct 10681 GCCTGGCTCATTACAACAAGCGATCCACCATCACCTCCAGGGAAATCCAGACCGCCGTGC 10622 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 10621 GCCTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 10573 >seq2375 Length=8961 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| Sbjct 6636 TCTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 6689 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| | |||||||| | Sbjct 6690 TGAGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCC 6749 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| ||| ||| | | | ||||||||||||||||||| Sbjct 6750 GCCTGGCTCATTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGC 6809 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | ||| || || ||||||| ||||||||| ||||||||||| Sbjct 6810 GTCTCCTGCTGCCTGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 6858 >seq672 Length=104558 Score = 183 bits (202), Expect = 4e-40 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || ||| |||| ||| |||| ||| Sbjct 14849 TCTACAAGGTGCTGAAGCAGGTGCACCCGGACAC---TGG--CATC-TCCTCCAAGGCCA 14796 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| | |||||||| | Sbjct 14795 TGAGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCC 14736 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| | Sbjct 14735 GCCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCC 14676 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||| | ||||||||| || |||||||||| Sbjct 14675 GCCTCCTGCTGCCCGGGGAGCTGGCTAAGCACGCCGTGTCTGAGGGCACCA 14625 >seq60 Length=2806165 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| ||| | ||| Sbjct 1868074 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCTAAGGCGATG 1868021 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| | |||||||| ||| Sbjct 1868020 AGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCCGC 1867961 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 1867960 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 1867901 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1867900 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1867852 >seq70 Length=2359738 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| |||||| |||| |||| || |||| ||||| Sbjct 1471348 TACAAGGTGTTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCTTCCAAGGCCATG 1471295 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| | || ||||||| | ||||||| ||| Sbjct 1471294 AGCATCATGAACTCATTCGTGAACGACATTTTTGAGCGCATCGCCTCCGAGGCGTCCCGC 1471235 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 1471234 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 1471175 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 1471174 CTCCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 1471126 >seq190 Length=819561 Score = 145 bits (160), Expect = 1e-28 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || |||| | ||| Sbjct 802940 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCTTCCAAGGCTATG 802993 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||| | | ||||||| ||| Sbjct 802994 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATTGCCTCCGAGGCTTCCCGC 803053 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||| ||| ||| ||| | | | ||||||||||| ||||| || Sbjct 803054 CTAGCCCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACAGCCGTCCGT 803113 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| || || |||| ||||||||| ||||||||||| Sbjct 803114 CTCCTGCTACCCGGGGAGCTAGCCAAGCACGCCGTGTCCGAGGGCAC 803160 >seq89 Length=2090648 Score = 120 bits (132), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| || ||||||||||| || |||||| || |||| | |||| ||| ||||| Sbjct 1336187 CCATGAGCATTATGAACTCGTTCGTGAACGACCTGTTCGAGAGGATCGCCACGGAGGCGT 1336246 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | |||||||||| ||| ||| || | ||| | |||||||||| Sbjct 1336247 CCCGGCTGGCTCAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCG 1336306 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1336307 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1336360 >seq80 Length=2229659 Score = 120 bits (132), Expect = 4e-21 Identities = 205/292 (70%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | || || ||||| || ||||| || || | Sbjct 1869103 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAACGCCGGGACCAACCGGC 1869044 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||||||||| || | Sbjct 1869043 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAGGGCATTTACG 1868984 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG-CA 260074 |||| || ||||||||||| ||||| ||||| | || ||||||||||| | || | || Sbjct 1868983 ACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGCATCGGCGTCGCGGTCA 1868924 Query 260075 -CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 | | | || | |||| | |||| | || ||||||||||| | || ||||| | Sbjct 1868923 GCTGCATCAGAGCAAC-CGGGAG-CTACATCGCCGGCACCAACGGGAACTCGAACGGGTT 1868866 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||||||| | |||| ||| |||| || |||||||| |||||| || Sbjct 1868865 GGTCCCCATGCTGAGAGTTTACAACAACACTGCTCGCTACGTTGACCAGGGC 1868814 Score = 104 bits (114), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||||| ||||||||||| | || | |||||||||||||||| |||| | Sbjct 1867891 TGCTGCTGGCGCCGATGCCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTCCA 1867832 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| | ||| |||||||||||||| ||| | || ||||| || || || | | Sbjct 1867831 TCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGATCG 1867772 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| ||||||| | || |||| || | | || ||||||| Sbjct 1867771 TCAACCCCCACCTGCTGAAAGACATGACGGAGAGGGGGCTGTGGA 1867727 Score = 89.7 bits (98), Expect = 7e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | || ||||| ||||| |||||| ||||| Sbjct 1868519 CAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAACCGGAACGCCGTACATGCTCTAC 1868460 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || ||||| |||| || ||||| ||||||||||||||||||| | || | ||| Sbjct 1868459 AAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1868401 Query 262210 CCTGTGCACCGAGATCGT 262227 ||||||||| ||| |||| Sbjct 1868400 CCTGTGCACGGAGGTCGT 1868383 >seq461 Length=215341 Score = 89.7 bits (98), Expect = 7e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1813105 GCGGTTAAAGCCGTGCCGCGTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGT 1813164 |||||| | ||| || ||||||| ||||| || ||||||||| |||||||||| Sbjct 39933 GCGGTTGATGCCATGGCGCGTGATGGCCATCAGGTGGCCGCGGCAGGTCATGGTGTCGCA 39992 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || | |||||||| ||||||||||| |||||| |||||||| ||| Sbjct 39993 CAGCAGAGCCAGGTGGCGGTAGTTGACATAGGAGCCGTCGAAGGAGATGACG 40044 >seq3 Length=10095097 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 1456179 GAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GC 1456236 ||||| || || | ||||| || || ||||||||||| ||||||||| ||| ||| || Sbjct 6542968 GAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCTTT-TGCTGC 6543026 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| |||||| |||||| | |||||||||||||| || Sbjct 6543027 CATCTATTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCT 6543065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177514803501826