Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq80 196 5e-45 seq332 89.7 5e-13 seq23 89.7 5e-13 >seq80 Length=2229659 Score = 196 bits (216), Expect = 5e-45 Identities = 880/1386 (63%), Gaps = 24/1386 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| || | ||| |||| || || ||||| ||||| ||||| ||| | Sbjct 1869179 CAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGACGGACATCGACGCGGCCATC 1869120 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | || |||| ||| ||| || ||||| || || ||| | || | Sbjct 1869119 GAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAAC 1869060 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || ||| ||| || ||||| || || |||| ||||| || |||||| Sbjct 1869059 GCCGGGACCAACCGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGC 1869000 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||||||| |||| ||| | |||||| |||||||||| || ||||| Sbjct 1868999 ATCGAGGGCATTTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGC 1868940 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || | || | | | | | || | ||| ||| ||||| ||||||||| Sbjct 1868939 ATCGGCGTCGCGGTCAGCTGCATCAGAGCAACCGGGAGCTACATCGCCGGCACCAACGGG 1868880 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 || | | ||| || | |||||| || | || | ||| ||| | | || | || ||| Sbjct 1868879 AACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAACACTGCTCGCTACGTTGAC 1868820 Query 7924 CAGGGGGGAAAGCGCAAAGGC-----GCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||| || || |||||| ||| || || || |||||||||||||| | Sbjct 1868819 CAGGGCGGCAA--CAAAAGGCCCGGAGCCTTCGCGATGTACCTGGAGCCGTGGCACTTCG 1868762 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGC 8037 || | | | | | || | ||| |||| ||| || || ||| | ||| | Sbjct 1868761 ACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGGAAAAGAGGAGCAG-AGAGCCAGG 1868703 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 || || |||| || ||||| | ||||| ||||| |||| ||| || | | || | Sbjct 1868702 GACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGAGAGCAACCAA 1868643 Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAA 8157 | ||||| || ||||| ||||| || || | | | | || | Sbjct 1868642 GACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGACGAGTGCTGGGGGGAGGAG 1868583 Query 8158 TTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCG 8217 ||||| | | |||| |||||| | || || | |||| ||||| || Sbjct 1868582 TTTGAGAAGCTTTACACGACATACGAGAAGGAGGGGAGGGTGAAGCGGGTGGTGAAGGCT 1868523 Query 8218 CGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTG 8277 | | || |||||| ||||| | || | |||||||| | |||||||||||| Sbjct 1868522 CAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAACCGGAACGCCGTACATGCTC 1868463 Query 8278 TACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGC 8337 ||||||||||| |||||| || |||||||| ||| |||||||||| |||||| Sbjct 1868462 TACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAACCTGGGCACCATCAAGTGCAGC 1868403 Query 8338 AATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTA 8397 || |||||| | || | || |||||| | | ||||| ||||| ||||| ||||| Sbjct 1868402 AACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAAGACGAGGTGGCGGTTTGTAATCTG 1868343 Query 8398 GCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAAC 8455 || || | | | ||| || ||| |||| | | ||||| ||||| || Sbjct 1868342 GCCTCCATCGCTCTCAACATGTACGT-----CACGCCAGAGCGGACTTATGACTTCAAAA 1868288 Query 8456 AATTGAAAAACGCCGTG---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCA 8512 || || | | ||| |||| | || || | | |||||||| ||| Sbjct 1868287 AACTGGCA---TCTGTGACCAAAGTAATCGTGAAAAACCTGAACAAGATCATTGAAATCA 1868231 Query 8513 ATTTTTATCCCTTGGAAGAAGCGCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTG 8571 | | || || | ||||| || | || |||| ||||||||| || |||| | Sbjct 1868230 ACTACTACCCGGTCCCCGAAGC-CGAGAGGTCCAACAAGCGCCACAGGCCAATTGGAATC 1868172 Query 8572 GGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAA 8631 || || ||||| |||| ||||| || | || |||| ||| | |||||||| || Sbjct 1868171 GGAGTCCAAGGCTTGGCAGACGCCTTCATCTTGATGCGTTACCCGTTCGAAAGCCCCGAG 1868112 Query 8632 GCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGC 8691 |||| |||||||||| | || || || | || |||| ||| | || || ||| Sbjct 1868111 GCGCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGC 1868052 Query 8692 TGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGC 8751 || | || ||| || | ||| | ||||| |||||| ||| ||| | |||| | Sbjct 1868051 TGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCCCCCGTCAGCAGG 1867992 Query 8752 GGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGAT 8811 || | |||| ||||||||||||| || || || ||||| | |||| Sbjct 1867991 GGCGTCCTGCAGTACGACATGTGGAGCAAGACACCGACGGACCTGTGGGACTGGAAGCTG 1867932 Query 8812 TTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCC 8871 |||| || || || || ||| || | || ||| || |||| |||||| Sbjct 1867931 CTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCGATGCCC 1867872 Query 8872 ACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAAC 8931 || || | ||||| || || |||| |||||||| ||| | ||| | | ||||| |||| Sbjct 1867871 ACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAAC 1867812 Query 8932 GTGTAC 8937 | ||| Sbjct 1867811 ATCTAC 1867806 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||| | || | ||||| || | || |||||||| ||||| ||||| || Sbjct 71055 CGCCATCATCGAGTCGCAGACAGAAACGGGGACACCATACATGCTCTACAAGGACGCCTG 70996 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || ||| |||||||||| | ||||||||||||| | || Sbjct 70995 CAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 70936 Query 8352 AATTGTACAGTACA 8365 | ||||| |||||| Sbjct 70935 AGTTGTAGAGTACA 70922 >seq23 Length=4589928 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || |||||||| || || |||||||||||| Sbjct 3279580 CCCCCCCTCAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 3279521 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 3279520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3279461 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 3279460 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3279401 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 3279400 TCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || || || ||||| || ||||||||||| Sbjct 3277388 CCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAC 3277329 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 3277328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3277269 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | ||||| | ||||| Sbjct 3277268 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3277209 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || ||||| || || || | || || || || || ||||| ||| || Sbjct 3277208 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATGTTGATT 3277155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505378986383960