Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq22 102 1e-16 seq54 100 4e-16 seq10 89.7 7e-13 >seq22 Length=4639432 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 214081 ACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCAT 214140 |||| | || | ||| | |||||||| || |||||||| || ||| ||||||||| Sbjct 4113043 ACGTCTGGCCATCGGTCAGGAGATGTTCGGCCTCGTGCCGGGCCTCACCATGTACGCCAC 4113102 Query 214141 TATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATG 214200 ||||||||||| ||||||||||| || || ||| | ||||| ||||| || || Sbjct 4113103 CATCTGGCTGAGGGAGCACAACAGAGTCTGTGACATCCTGAAGGCGGAGCATCCCACCTG 4113162 Query 214201 GAACGACGAACAGCTGTTCCAGATCACTCGTTTAATCATTA 214241 | |||| || ||||| ||||||| ||| | | ||||||| Sbjct 4113163 GGACGATGAGCAGCTTTTCCAGACCACCAGACTCATCATTA 4113203 >seq54 Length=3035547 Score = 100 bits (110), Expect = 4e-16 Identities = 199/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 214601 AGGGAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACT 214660 || ||| || || |||| |||||||| | |||| ||| | || || || || || Sbjct 2624661 AGAGAAAGAAATGGCTGCATTGCTGGAGGAGATGTACGAAGATGTGGATGCAGTGGAGCT 2624720 Query 214661 CTACGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCT 214720 |||| | | | || | || ||||| | ||| | |||||| |||| || | | | Sbjct 2624721 CTACCCCGGCCTGCTGGTGGAGAAACCCCGGCCCAACGCCATCTTCGGGGAGACCATGGT 2624780 Query 214721 CGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGG 214780 ||| ||||||||| |||||||| | ||| || || || |||||||||||||| Sbjct 2624781 GGAGATGGGGGCTCCTTTCTCCCTCAAGGGCCTAATGGGAAATCCCATCTGCTCCCCGGA 2624840 Query 214781 CTACTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGAC 214840 |||||||| | || ||| |||| || || | |||||| |||||| | | ||| | Sbjct 2624841 GTACTGGAAGCCCAGCACCTTCGGAGGCAGCGTGGGTTTCAGCATCGTCAACACCGCCTC 2624900 Query 214841 CCTTCAGTCTCTCATCTGTAGCAACGTCAAGGGA---TGTCCGTTAGCCGCATT 214891 || ||| ||| |||| | |||||| ||||| ||||| | || ||||| Sbjct 2624901 GCTGCAGAAGCTCGTCTGCAACAACGTACAGGGACCCTGTCCAATGGCGGCATT 2624954 >seq10 Length=6656597 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 214094 GGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGA 214153 ||| | ||| |||| |||||| | || ||||| ||||||||| | ||||| || Sbjct 2053641 GGTCAGGAGGTGTTCGGACTCCTTCCTGGTTTGGGAATGTACGCCACGCTGTGGCTCAGG 2053582 Query 214154 GAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAG 214213 ||||||||| |||| || ||| | |||||| ||| || || ||| ||||||| ||| Sbjct 2053581 GAGCACAACCGGGTCTGTGACATCCTGAAAGCAGAACATCCCACCTGGGACGACGAGCAG 2053522 Query 214214 CTGTTCCAGATCACTCG 214230 |||||||||| ||| || Sbjct 2053521 CTGTTCCAGACCACCCG 2053505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723313014671520