Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq80 342 7e-89 seq3 111 2e-19 seq332 87.8 2e-12 >seq80 Length=2229659 Score = 342 bits (378), Expect = 7e-89 Identities = 1248/1946 (64%), Gaps = 11/1946 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| |||||||| | || | || || || || || Sbjct 1867711 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTG 1867770 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || ||||| || | || || || ||||| || || ||||| || | || Sbjct 1867771 ACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1867830 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || ||||| || || || ||||| || |||| || Sbjct 1867831 ATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGC 1867890 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | ||| || || || || | ||||| ||||| || Sbjct 1867891 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1867950 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| |||| | ||||| || || | || | || | || || Sbjct 1867951 TCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAGCCT 1868010 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | || || || || || ||||| | || || Sbjct 1868011 TCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 1868070 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || |||| | ||||| || || || | || ||||| || Sbjct 1868071 TAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAACGGG 1868130 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | | || || || |||||||| || || || || || || || || || || Sbjct 1868131 TAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTGG 1868190 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || || || ||||| || | || || || || || || || || || || Sbjct 1868191 CGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTC 1868250 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || ||| || | |||||| ||| ||||| || ||| | |||| || Sbjct 1868251 AGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAA-GTCCGCTC 1868309 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || ||||||||||| || ||||| | Sbjct 1868310 TGGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTG 1868369 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | || | | | ||| || || || || || || ||||| || ||||| || || Sbjct 1868370 GCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTG 1868429 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 |||||| ||||| |||| || ||||| ||||| || || |||| || || ||||| | Sbjct 1868430 CTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGT 1868489 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||||| | ||| || | || ||| | | Sbjct 1868490 CTGCGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCC 1868549 Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| || || ||| || || ||| || || || || ||||| || || | || Sbjct 1868550 CTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCC 1868609 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||||| || | |||||||||| ||||| | | | || ||||| ||||| || Sbjct 1868610 GGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAA 1868669 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 || ||||| ||||| || || ||||| || |||| ||| | || || ||||| || Sbjct 1868670 CAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGT 1868729 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || || || || | | || | ||||| || || || || ||||| Sbjct 1868730 GTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGC 1868789 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | |||| || | ||| || || ||||| || | ||| | |||||||| || || || Sbjct 1868790 GAAGGCTCCGGGCCTTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAAC 1868849 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 ||||||||| || | | || || || || || || || || | || || || || | Sbjct 1868850 TCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGT 1868909 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 ||| | || || | | | || || || || || ||| || || || || || Sbjct 1868910 TGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCA 1868969 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | |||| ||||| || || ||||| ||||| || ||| ||||| || || || || Sbjct 1868970 CTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCA 1869029 Query 69969 GCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 ||| |||| || | | | || || || || || | || || || ||||| ||||| Sbjct 1869030 GCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAA 1869089 Query 70029 CCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAAT 70088 ||| || || || ||||| ||||| || || || || | || || ||| | || || Sbjct 1869090 CCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGAT 1869149 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 || | || || | ||| | ||| ||||| || || || || || || | | Sbjct 1869150 CCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCT 1869209 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || ||| || || |||||||| || |||||||| ||||||| || || |||| || Sbjct 1869210 CAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCGGTC 1869269 Query 70209 GTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAGG 70268 ||| || || | || || || ||||| | | || || || | | Sbjct 1869270 GTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCGAGCGTCTTCTT 1869329 Query 70269 TGAGATAATCGGAGATCGTTTACCATTTT--TAGGATTAACATAGTTGAATAAATCTTCC 70326 | ||| || || || || | | || ||| || ||||||||| | | |||||| Sbjct 1869330 GGCGATCATGGGCGA--GTGGCGCTTGTTCAGAGGGTTGACATAGTTGTACAGGTCTTCC 1869387 Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386 || || || || || | ||| || || |||||||| | ||||| | ||| || || || Sbjct 1869388 ATCACGTCGCTGAACATTTTCTTGGTCTCCTTGTGCAGGTTTGAGACGGCGATCCTTGCG 1869447 Query 70387 GCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAAC 70446 || || || || ||||| || |||| || || || || || || || || || | | Sbjct 1869448 GCGAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGCGTGGCGGCGATCTCGGCCGCCAGC 1869507 Query 70447 GTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 || || | || | || || || ||| | || | || || || || ||||||| || Sbjct 1869508 GTGTCGAGCTCCACCGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATGGTGATC 1869567 Query 70507 TTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGAGATGT 70565 | || || | || || | |||||| | || || || |||| || || || || Sbjct 1869568 TGAGCCGGGTCCACAAAATCAGAGTTCAGGCTGTAGCA-AAGCTTCTGGATGCGCGAGGT 1869626 Query 70566 AATTTTATCAAACATAACATTCTCCT 70591 |||||||| ||||| || ||||| Sbjct 1869627 GATTTTATCGAACATGACGCGCTCCT 1869652 >seq3 Length=10095097 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||| || || | || || || ||||| || || | ||| | Sbjct 6543100 CCTCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCT 6543041 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | |||||||||||||| || || ||||||||||| || || |||||||| | Sbjct 6543040 TTAGCCAATAGATGGCAGCAAAAGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAAG 6542981 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||||| ||| || Sbjct 6542980 CCACAAGTCGCTCCCC 6542965 >seq332 Length=374033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 || || || ||||| || ||||||| || ||||| |||||||| || ||||| |||| Sbjct 70936 TCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTCCTGTTG 70995 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||||||||||| || || | || || || ||||| |||| || ||||| || Sbjct 70996 CAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGCGACTCGATGAT 71051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882414115720