Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq80 156 5e-33 seq332 91.5 2e-13 seq478 82.4 1e-10 seq3 82.4 1e-10 >seq80 Length=2229659 Score = 156 bits (172), Expect = 5e-33 Identities = 652/1008 (65%), Gaps = 27/1008 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | | ||| || | ||||| |||||| Sbjct 1867713 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTGAC 1867772 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| || | ||||||||| | ||||| | || | Sbjct 1867773 GATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1867832 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || || ||||| || || ||||| || |||| || || Sbjct 1867833 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGCAG 1867892 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 1867893 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1867952 Query 110854 CTT-GGTTTCACCTTCCCACATGTCAAACTGAAGCAC--CCCTTGGGACGCGGGAGAACC 110910 | | ||| || ||| ||||||| |||| || || |||| |||| ||||| || Sbjct 1867953 CGTCGGTGTCTTGCTCC-ACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAG--CC 1868009 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 || | || || |||| || | | | |||| || |||||||||||||||| || Sbjct 1868010 TTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 1868069 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 || || ||||| ||||| || | || | | || || || || || | Sbjct 1868070 GTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAACGG 1868129 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 ||| || ||| || || | || || | ||||| || || | ||||| || ||||| Sbjct 1868130 GTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTG 1868189 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 ||| | || ||| | | || || || || || | || | ||||||| || Sbjct 1868190 GCGCTTGTTGGACCT-CTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGT 1868248 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATCAAAAGTGC 111206 | || ||||| || || | || | || || ||||||| | ||| |||| | Sbjct 1868249 TCAGGTTTTTC---ACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAAGTCC 1868305 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | |||| |||| ||| | || ||||| || |||| ||| ||||| ||| || Sbjct 1868306 G---CTCTGGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCT 1868362 Query 111267 CATCCTTATCTG-TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 | || || ||| ||||||| | | || || || | |||| | ||| || || ||| Sbjct 1868363 CGTC-TTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCC 1868421 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | |||| || || |||||| |||||||||| || |||||||||||||| ||||| || Sbjct 1868422 AGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCG 1868481 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT 111444 || |||||||| || | || || || | ||||| | | | | || || || || Sbjct 1868482 GTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGC-TT 1868540 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 111503 ||| |||||| |||||| | ||||| || ||||||||||| ||| | || | Sbjct 1868541 CACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTC-CCCCCAGCACT 1868599 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAAC 111561 || ||| || || || ||| ||||| | |||||||| | | || ||| || Sbjct 1868600 CGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGACCA--GTCTTGGTTGCTCTCCAC 1868657 Query 111562 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 ||||||||||| ||||| || |||||||||| | ||||| || || Sbjct 1868658 TCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCT 1868705 Score = 82.4 bits (90), Expect = 1e-10 Identities = 172/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || ||||| | || || || | || |||| | | || || | || || || Sbjct 1868935 CCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCC 1868994 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 111953 | ||| ||| || || |||||| |||||||| ||||||| ||| || | ||| | Sbjct 1868995 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCC--GGTTGG 1869052 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 112012 | || || ||||||||||| || | ||||| ||||| || | | |||| | || | Sbjct 1869053 TCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTG 1869111 Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072 || ||||| | | | | || ||||| ||||||||| || | | |||| ||||| | Sbjct 1869112 TACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGC 1869171 Query 112073 ATGTACTGTGGG 112084 |||| ||| ||| Sbjct 1869172 ATGTGCTGCGGG 1869183 >seq332 Length=374033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | | ||||||||||| || ||| || || | ||| || || || || Sbjct 70908 CTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCC 70967 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || || | ||||| |||||| ||||||| || ||||||||||||||||| || ||||| Sbjct 70968 CAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCC 71027 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| || ||||| || | || || || | ||| Sbjct 71028 CGTTTCTGTCTGCGACTCGATGATGGCGTACCA 71060 >seq478 Length=201109 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || |||||||||||||||||||||||||||||||| || || || ||||| ||||| Sbjct 177068 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 177009 Query 122431 AAGTCAAATGGATTCTTCGC 122450 ||||| || || |||| ||| Sbjct 177008 AAGTCGAAGGGGTTCTCCGC 176989 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || |||||||||||||||||||||||||||||||| || || || ||||| ||||| Sbjct 187616 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 187675 Query 122431 AAGTCAAATGGATTCTTCGC 122450 ||||| || || |||| ||| Sbjct 187676 AAGTCGAAGGGGTTCTCCGC 187695 >seq3 Length=10095097 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| |||||||| ||| | || || |||||||| || | ||||| Sbjct 6543100 CCTCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCT 6543041 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | | |||||| || || ||| || || || ||||||||||| ||||||||| ||||| Sbjct 6543040 TTAGCCAATAGATGGCAGCAAAA-GAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAA 6542982 Query 122797 GCAAAAAGGCGTTC 122810 || | ||| || || Sbjct 6542981 GCCACAAGTCGCTC 6542968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007875720800