Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq80 174 2e-38 seq478 91.5 2e-13 seq332 89.7 6e-13 >seq80 Length=2229659 Score = 174 bits (192), Expect = 2e-38 Identities = 890/1390 (64%), Gaps = 42/1390 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 1867807 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAC 1867866 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || || ||| Sbjct 1867867 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 1867926 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTG-TCTCCCCCTGCCACATATCAAACTGGA 118359 || || ||| ||| |||| | | | | | | || || |||||| || |||| | Sbjct 1867927 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTCGGTGTCTTGCT-CCACATGTCGTACTGCA 1867984 Query 118360 GGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 ||| || | |||| || || || || | ||||| || ||||| | | || Sbjct 1867985 GGACGCCCCTGCTGACG--GGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 1868042 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || ||| |||||||||| ||||| |||| || || || ||||| || | || | Sbjct 1868043 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAG 1868102 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 118537 || |||||| | || |||| | || ||| || || | || || | || Sbjct 1868103 CAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCC 1868162 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---AC 118594 |||||| |||| |||||||| | || | | | || ||| || ||| || || Sbjct 1868163 TTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCT---CGGCTTCGGGGAC 1868219 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 || || | || | || || | | | || || ||||| || || || || | Sbjct 1868220 CGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAG- 1868278 Query 118655 ATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 ||| || |||| | | ||| || | || |||| |||| ||| | || |||| Sbjct 1868279 ATGCCAGTTTTTTGAAGTCATAAGTCCG---CTCTGGCGTGACGTACATGTTGAGAGCGA 1868335 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || ||||||||||| || | ||| || | |||||||| | | ||||||| Sbjct 1868336 TGGAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGC 1868395 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||| ||| | ||| |||||||||| ||||| ||||| ||| |||| ||||| | Sbjct 1868396 ACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGT 1868455 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 | ||||| |||||||| ||||| || || ||||| || |||| || || || | ||| | Sbjct 1868456 CTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAA 1868515 Query 118894 CATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGG 118952 | ||| || || || || | | |||||| | |||||| | ||||| || Sbjct 1868516 GCTGCTGAGCCTTCACCACCCGC-TTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGC 1868574 Query 118953 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGA 119012 |||||||| || ||| | ||| |||||| || || || || || | ||| Sbjct 1868575 TTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGA 1868634 Query 119013 GACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 ||||| ||| | |||| || ||||||||||| ||||| |||||||| || || Sbjct 1868635 GACCAGTCTTGGTTGCTCTCC---ACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCG 1868691 Query 119070 GAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||||||| |||| | | ||| || | ||| || || || ||||| || Sbjct 1868692 TAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTG-TTCTTCTTCAGCTCCAGGAA 1868750 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTACGAC 119184 || | | || ||||||||| |||||||||| ||||| | | |||| | Sbjct 1868751 TTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTT 1868810 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| || || | |||||| ||| | || | ||||| || | | | Sbjct 1868811 G-CCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACC 1868869 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGA 119301 | | || | || || || || ||| | | || ||||||| || | || Sbjct 1868870 CGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTT-GCTCTGATGCAGC-TGAC 1868927 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 | | | || || || || || | || || || | ||||||| | | || || ||| Sbjct 1868928 CGCG-ACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGT 1868986 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 | || || ||||| ||| | || | |||| ||||||||||| |||| || |||| Sbjct 1868987 AAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCC 1869046 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 | || || ||||||||||| || || | |||||| ||||| || | | |||| | Sbjct 1869047 GGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGC 1869105 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||| ||||| | | | ||| ||||| |||||| || || | ||| |||| | Sbjct 1869106 AGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTC 1869165 Query 119541 ATAAACATGT 119550 || | ||||| Sbjct 1869166 ATGAGCATGT 1869175 >seq478 Length=201109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || ||| || || |||||||||||||| ||||||||| ||||| | Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 176058 CCACCACACGCTC 176046 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | || || |||||||||||||| ||||||||| ||||| | Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 188488 CCACCACACGCTC 188500 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| | | |||||||||| || ||||||||||| || || | | | |||||| Sbjct 70908 CTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATT--TGATGGTG 70965 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||| | || || ||| |||| || || |||||||| ||||||||||| ||| Sbjct 70966 CCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTC 71025 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 ||||| || || || |||| || || || | ||| Sbjct 71026 CCCGTTTCTGTCTGCGACTCGATGATGGCGTACCA 71060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411444357880