Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq80 136 5e-27 seq478 82.4 9e-11 >seq80 Length=2229659 Score = 136 bits (150), Expect = 5e-27 Identities = 640/1002 (64%), Gaps = 21/1002 (2%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || ||||||| ||| || ||||| || || || ||||||||| |||| |||||| | Sbjct 1868702 GACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGT---GGAGAGCAAC 1868646 Query 104759 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 | |||||||| | ||||| ||| || || || ||| ||| ||| | ||| || Sbjct 1868645 CAAGACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGACGAGTGCTGGGGG-GA 1868587 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 ||||||||| |||||||| | |||||| | || || ||| || | |||| Sbjct 1868586 GGAGTTTGAGAAGCTTTACACGACATACGAGAAGGAGGGGAGGGTGAAGCGGGTGGTGAA 1868527 Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 ||| | | ||| | || || || |||| || || || || || || || ||||| Sbjct 1868526 GGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAACCGGAACGCCGTACAT 1868467 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 ||| ||||||||||| || ||| ||||| ||||| |||| |||| |||||| | Sbjct 1868466 GCTCTACAAAGACGCGTGCAACAGGAAGAGCAATCAGCAGAACCTGGGCACCATCAAGTG 1868407 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 ||| || || || || || |||| | || | |||| ||| ||| || ||||| Sbjct 1868406 CAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAAGACGAGGTGGCGGTTTGTAA 1868347 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114 || || || ||||||||| || ||| || |||||| ||| | ||| | | Sbjct 1868346 TCTGGCCTCCATCGCTCTCAACATGTACGTCACGCCAGAG---CGGACTTATGACTTCAA 1868290 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 |||||| || || ||| || |||||||| |||| | ||||| | || Sbjct 1868289 AAAACTGGCATCTGTGACCAAAGTAATCGTGAAAAACCTGAACAAGATCATTGAAATCAA 1868230 Query 105175 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 | ||||| || || | || || | | | ||| | |||||||| |||| Sbjct 1868229 CTACTACCCGGTCCCCGAAGCCGAGAGGTCCAACAAGCGCCACAGGCCAATTGGAATCGG 1868170 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT-CGCCACGCATTTGATTCCGACGAAG 105293 || || || | || || | |||| |||| | || || | || || | ||| | Sbjct 1868169 AGTCCAAGGCTTGGCAGACGCCTTCA-TCTTGATGCGTTACCCGTTCGAAAGCCCCGAGG 1868111 Query 105294 CGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTT 105353 || || |||| | || ||||||||||| || ||||||| || |||||||| | Sbjct 1868110 CGCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCT 1868051 Query 105354 CAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 105413 ||| |||| | | || || || || || | || || |||| | ||| || Sbjct 1868050 GCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGG--CTCCCCCGTCAGCAG 1867993 Query 105414 GG--GTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTACGACTGGGAAG 105470 || || || || | || |||| ||| || ||| | | | | |||| ||||| Sbjct 1867992 GGGCGTCCTGCAGTACGACATGT-GGAGCAAGACACCGACGGACCTGTGGGACT-GGAAG 1867935 Query 105471 CT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATG 105529 || || ||||| ||| | | || | | ||||| || || |||| || ||| Sbjct 1867934 CTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCGATG 1867875 Query 105530 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACG 105589 || || || ||||| || || ||| |||| || || || | | | || ||||||| | Sbjct 1867874 CCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGC 1867815 Query 105590 AACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTG 105649 |||||||| | || |||| | || ||||| ||| |||||| || || || Sbjct 1867814 AACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGATCGTCAACCCCCACCTGCTG 1867755 Query 105650 GATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | ||| | | |||| || || ||| | |||| |||||| Sbjct 1867754 AAAGACATGACGGAGAGGGGGCTGTGGAGCGAGGAGATGAAG 1867713 >seq478 Length=201109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||| ||| || || | ||||| |||||| |||| Sbjct 176069 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 176128 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| ||||| |||| ||||||||| ||| | ||||||| Sbjct 176129 CCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 176178 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||| ||| | | || | ||||| |||||| |||| Sbjct 188477 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 188418 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| ||||| |||| ||||||||| ||| | ||||||| Sbjct 188417 CCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 188368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238395494520