Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq80 208 8e-49 seq659 95.1 1e-14 seq478 87.8 2e-12 seq3 87.8 2e-12 >seq80 Length=2229659 Score = 208 bits (230), Expect = 8e-49 Identities = 512/763 (67%), Gaps = 15/763 (2%) Strand=Plus/Minus Query 53207 TTGGGTATCCACGGTGACG-ACTAC-ACGCGTGTCCGTGAGACGTACGACTTAATGAGCC 53264 ||||| |||||||| |||| || | ||||| | | ||||||||| || | || Sbjct 1869154 TTGGG-ATCCACGG-GACGGACATCGACGCG-GCCATCGAGACGTACAACCTGCTGTCAG 1869098 Query 53265 AAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGA 53324 | |||| || || |||||| | || ||||| |||||||| || || || | || ||| Sbjct 1869097 AGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAACGCCGGGACCAACCGGCCACAGC 1869038 Query 53325 TGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGC 53384 |||| |||||||||||| | || ||||| || ||| ||||| ||||| ||||| || | Sbjct 1869037 TGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAGGGCATTTACGACACCC 1868978 Query 53385 TCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA---CTGCTCGA 53441 | ||| |||| |||| ||| ||||| | | || || ||||| || | ||| | Sbjct 1868977 TGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGCATCGGCGTCGCGGTCAGCTGCA 1868918 Query 53442 ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGC 53501 || | || | ||| | ||| || || ||||| | | | || | || | Sbjct 1868917 ---TCAGAGCAACCGGGAGCTACATCGCCGGCACCAACGGGAACTCGAACGGGTTGGTCC 1868861 Query 53502 CTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCA 53561 | ||||| | || | ||||||||| || || ||||| ||||||| || || | Sbjct 1868860 CCATGCTGAGAGTTTACAACAACACTGCTCGCTACGTTGACCAGGGCGGCAACAAAAGGC 1868801 Query 53562 AGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGC 53621 || | ||||| || ||||| |||||||||||| |||| | | || || || |||| Sbjct 1868800 CCGGAGCCTTCGCGATGTACCTGGAGCCGTGGCACTTCGACGTGTTTGAATTCCTGGAGC 1868741 Query 53622 TGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGG 53680 || ||| ||| | || ||| | | | | ||||| || ||| || |||||| Sbjct 1868740 TGAAGAAGAACACGGGAAAAGAGGAGCAGAGAGCCAGGGACCTCTTCTAC-GCCCTGTGG 1868682 Query 53681 ATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCG 53740 || || ||||| |||||| | ||||||| || | || |||| |||||||| || Sbjct 1868681 ATCCCCGACCTGTTCATGAAGCGAGTGGAGAGCAACCAAGACTGGTCTCTGATGTGTCCC 1868622 Query 53741 AACGAGTGCCCCGGCCTCCAGG-GTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGAC 53799 ||||||| ||||| ||| | | ||| || || ||||||||| | || | || ||| Sbjct 1868621 GACGAGTGTCCCGGGCTCGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTTTACACGAC 1868563 Query 53800 GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 |||| |||| | ||| | ||| ||||| | || | ||| | || || Sbjct 1868562 ATACGAGAAGGAGGGGAGGGTGAAGCGGGTGGTGAAGGCTCAGCAGCTTTGGTACGCCAT 1868503 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 | || || ||| ||| || ||||||||||||||| |||||| || || |||| Sbjct 1868502 CATCGAGTCGCAGACGGAAACCGGAACGCCGTACATGCTCTACAAAGACGCGTGCAACAG 1868443 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||| ||| ||||| | ||| |||||| | |||||| Sbjct 1868442 GAAGAGCAATCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 1868400 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 1867893 CCTGCTGCTGGCGCCGATGCCCACGGCGTCCACTGCCCAGATCCTGGGCAACAACGAGTC 1867834 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||| | ||||| | |||||||||| ||| || ||| | || ||||| Sbjct 1867833 CATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTT 1867780 >seq659 Length=112927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || |||||||| ||||| ||| | || ||||| || ||| Sbjct 12746 GTGAAAATGTAACGAGGACTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGT 12805 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || || ||| | ||||||| |||||||||||||| |||||||| ||| Sbjct 12806 CCCAGGGGTTGCAGGATGTTTATGTTGTTGCTCCCCACAAAGTTTTGGGCCAAGTTCACA 12865 Query 117425 ATCGT 117429 || || Sbjct 12866 ATTGT 12870 >seq478 Length=201109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 177068 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 177009 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 177008 AAGTCGAAGGGGTTCT 176993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 187616 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 187675 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 187676 AAGTCGAAGGGGTTCT 187691 >seq3 Length=10095097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| |||||| || ||| ||||| ||||| || || | |||||| Sbjct 6543098 TCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCTTT 6543039 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| || || || |||||||||||| || ||| ||||| || Sbjct 6543038 AGCCAATAGATGGCAGCAAAAGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAAGCC 6542979 Query 74892 ACAAGGCG 74899 ||||| || Sbjct 6542978 ACAAGTCG 6542971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194980065400