Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq80 233 2e-56 seq23 170 2e-37 seq332 100 3e-16 >seq80 Length=2229659 Score = 233 bits (258), Expect = 2e-56 Identities = 908/1398 (65%), Gaps = 63/1398 (5%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| |||||| |||||| Sbjct 1867819 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATC 1867878 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCT-- 80511 || | | || ||| |||| || |||||| || ||| | ||| || | || Sbjct 1867879 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 1867938 Query 80512 --GACCAAAAATCAACCCCAACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCT- 80566 | || | || || || ||| | ||||||||||| ||||| || |||| Sbjct 1867939 CAGTCCCA----CAGGTCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCT 1867994 Query 80567 -CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCC---CTCCGTCTTGGCCAGCTCA 80622 | |||| |||| || || |||||||||| ||||| ||| | ||||||||| Sbjct 1867995 GCTGACGGGGGAG--CCTTCGTACGTCTCGTAGGGGCCGAGCTCGGC---GGCCAGCTCG 1868049 Query 80623 CA---CGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679 || || ||||| |||| |||| || ||| |||||| | |||| | | | Sbjct 1868050 CAGCTCGCCTCCA---GGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAG-CAG 1868105 Query 80680 C-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 | |||||| ||| ||||||| | | ||||| ||||| |||| |||| ||| || Sbjct 1868106 CTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTG 1868165 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 || ||||| | || || | |||||||||||| || | |||||| || || | ||||| Sbjct 1868166 GACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTA 1868225 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC---AACCCGTGTAACATCATG 80855 |||| | || |||| ||||||||| | | || || || ||| ||| Sbjct 1868226 GTAGTTGATTTCAATGATCTTGTTCAGGTT---TTTCACGATTACTTTGGTCACA-GATG 1868281 Query 80856 -AAGTTTCTGAAAGTCGAATTGGTTCCC-----CTTCAC--AAATGCCGGAAGGCTCAGG 80907 ||||| | ||||| || || | | | | || | ||| | || | | Sbjct 1868282 CCAGTTTTTTGAAGTC--ATAAGTCCGCTCTGGCGTGACGTACATGTTG--AGAGCGATG 1868337 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTC--AGCATCTGTAAACTCGACGATTTCCGTGC 80965 || |||||||| || || |||||||| || || ||| |||| |||| ||||||| Sbjct 1868338 GAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGT--ACTCCACGACCTCCGTGC 1868395 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 ||| || |||| || || |||||||| | ||| || ||| |||||| |||| Sbjct 1868396 ACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGT 1868455 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 | |||||| ||||||||| || ||||| || ||| |||| || |||||||| ||||| Sbjct 1868456 CTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAA 1868515 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT-AAGCT 81144 || | ||||| |||||| | | || || | | || | | || ||||| Sbjct 1868516 GCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTAAAGCT 1868575 Query 81145 TCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 || || |||| | || || ||| | || ||||||| || |||||||| Sbjct 1868576 TC-TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGA 1868634 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 |||||| || | |||| || ||||||||| ||| |||||||| |||||| | Sbjct 1868635 GACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAG 1868694 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 || ||||| | | | | |||||| | ||| ||| || ||| || || || Sbjct 1868695 AAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCA 1868754 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA----TCGACCCCTTGCGACGGCC 81380 | | ||| ||||| |||||||| |||| |||| || |||| | ||| Sbjct 1868755 AACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG-TTGCC 1868813 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||||||| ||||| || ||||| ||| | || | || ||| |||| | || | Sbjct 1868814 GCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTT 1868873 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || | ||||| || || |||| ||| | || | | ||||| | | Sbjct 1868874 CGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGAC 1868933 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 |||||||| || | | || ||||| | || ||| | |||| ||| || ||||| || Sbjct 1868934 GCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCC 1868993 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||||||||| || | ||||||| | |||| ||| ||||| |||| ||| || | || | Sbjct 1868994 CTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGT 1869053 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 ||||| ||||| || || |||| ||||| |||| | | ||||| ||||| || Sbjct 1869054 CCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 1869113 Query 81681 GGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 || || | | ||||| || |||| ||||| || || | | || | ||| | || Sbjct 1869114 CGTCTCGATGGCCGCGTCGATGTCCGTC-CCGTGGATCCCAACCGACACCCTCATGAGCA 1869172 Query 81740 TGTACTG-GGGCGTCTCG 81756 ||| ||| ||||| |||| Sbjct 1869173 TGTGCTGCGGGCG-CTCG 1869189 >seq23 Length=4589928 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || || ||||| || || |||||||| || || || Sbjct 3279126 ATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAACCAAGT 3279185 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 3279186 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3279245 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | |||||||| Sbjct 3279246 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTATAAC 3279305 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| ||| ||||||| | ||||| Sbjct 3279306 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 3279352 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || ||||| ||| | || Sbjct 3277162 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 3277221 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 3277222 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3277281 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3277282 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 3277341 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || || ||||| || ||| ||||||| Sbjct 3277342 ATCCAGAAGGAGTCAACCCTTCACCTGGTCCTGCGTCT 3277379 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || |||||||| ||| | || Sbjct 3279354 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAGT 3279413 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || || || || |||||| Sbjct 3279414 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 3279473 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 3279474 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 3279533 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || |||||||| || || || ||| ||||||| Sbjct 3279534 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCT 3279571 >seq332 Length=374033 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 ||||| || || ||| |||| || | ||||||||||| ||| || || || || Sbjct 70906 ACCTCATCTTCACTTGTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTG 70965 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 |||||||||| |||||| ||| |||||| |||||||||||| |||||| || || Sbjct 70966 CCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTC 71025 Query 81049 CCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCA 81103 || || || ||| |||| || |||||||| ||| | || | ||||| |||| Sbjct 71026 CCCGTTTCTGTCTGCGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCA 71080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288492951760