Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8 158 1e-33 seq16 105 5e-18 >seq8 Length=7211506 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| |||| ||||||||||||||| || || Sbjct 4602859 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGC 4602800 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || ||||| || |||| | |||||| ||||||||||| ||||| ||||| | Sbjct 4602799 ACCCCCAGACCCATATCAGCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAG 4602740 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| |||||||| | |||||||| || || |||||||||||| Sbjct 4602739 ACGTAGAACTGACAGAGAGCGTGGCAGGGGGGCAGAGCCATGAGG 4602695 Score = 145 bits (160), Expect = 6e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||||||||| || || || ||||||||||||||||| || || || ||||| Sbjct 4601885 CATGTCTTTGTACTCTGCACCAAAGTGTCTCCACTGGAACCCGTAAACGGGCCCGAGGTC 4601826 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || | || ||||||| ||||||| ||| ||| ||| ||||||||||| Sbjct 4601825 CCCCTCCTCTCGGTCGGTGAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCGTC 4601766 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||| || || ||||| || ||||| |||| ||||| ||||| Sbjct 4601765 CCAGATCTTCACGCCTTTCTCCGACAGCTCCTTGGCATTTGTCGACCC 4601718 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 ||||||||||||| || |||| |||||| |||| ||| |||||||| ||| ||||| || Sbjct 4602617 CTTTGGGGTTCCATGCACACATGATGATCCGCCGGTCCTCTGGGTTCTTCTTGATGGTGT 4602558 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | | | || |||||||| ||||| ||| |||| ||| |||| Sbjct 4602557 CGATCACTTTCTGCAGCTGGTCCACACCCTGTCCCGTGTAATCTG 4602513 >seq16 Length=5321795 Score = 105 bits (116), Expect = 5e-18 Identities = 92/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 110396 GATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTT 110455 || ||||| | ||| ||||||||| | ||| |||| ||| ||||||| | ||||| | Sbjct 15210 GAACTTTAGGTTCC-TGCTGAGGATGATGTTGATCCGGTCCTTCAGAGGCCGGTTCTTCT 15268 Query 110456 CGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 | |||||||||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 15269 CTGGGATGGAGAACCAGGTCTTCCTGCCCATGATCACCACGTTCTGCTTCCCT 15321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||| || || ||| || |||| | || ||||| || |||||||| | | Sbjct 14241 ACTCTGGCAGCAGGCGGTATTCATCAGGACTGATTTCAGGGAGGAACGTGTCGCAGTCGA 14300 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | |||| ||||||||||||||| | |||||||||||||| |||||| Sbjct 14301 ACTGCTTCAGGATTCGAGTCACAAACAGCCTCTTTGTTCCCGGGCTCTCCATCAGCTCC 14359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406295182786716