Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq23 102 5e-17 >seq23 Length=4589928 Score = 102 bits (112), Expect = 5e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || ||||||| |||| || || || |||||| || ||||| || || || Sbjct 3277388 CCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAC 3277329 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 3277328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3277269 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 3277268 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 3277210 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 |||| ||| || || || || || | || || ||||| ||||||||||||||| Sbjct 3277209 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATGTTGATT 3277155 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | |||||| ||| || || || |||||||| || || Sbjct 3279353 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGA 3279294 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 3279293 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3279234 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| | | | ||| Sbjct 3279233 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCACTTGGT-TCC 3279176 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||| || || || || || | ||||| ||||| ||||||||||| Sbjct 3279175 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATGTT 3279123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314717812688009