Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8 132 4e-26 >seq8 Length=7211506 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || ||||| || ||||| || ||||| |||||| | ||||| || ||||||||| | Sbjct 4602687 GACCTCCCCCTCATGGCTCTGCCCCCCTGCCACGCTCTCTGTCAGTTCTACGTCTGTGAC 4602746 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || |||| || ||||| | |||||||| ||| Sbjct 4602747 GGTGAGCTGTCGTGTCAGCTGTACCAGCGCTCGGCTGATATGGGTCTGGGGGTGCCTTTC 4602806 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || |||||||| ||||| ||||||||||| || Sbjct 4602807 AACATCGCCAGCTACGCTCTTCTCACCTACATGATCGCACA 4602847 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| |||||||| || || |||||||| |||||||| | ||| Sbjct 4602847 TGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGACCC 4602788 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || |||| || || || ||||| || |||||||| || | ||||||||| || Sbjct 4602787 ATATCAGCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAGACGTAGAACTGA 4602728 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | |||||| ||||| || ||||| || ||||| || Sbjct 4602727 CAGAGAGCGTGGCAGGGGGGCAGAGCCATGAGGGGGAGGTC 4602687 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| | || || |||||||||| ||| || ||||||||||||||||| |||| Sbjct 4601717 GGGGTCGACAAATGCCAAGGAGCTGTCGGAGAAAGGCGTGAAGATCTGGGACGCCAACGG 4601776 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 ||| |||| ||| |||||||| | ||| ||| | || |||||||| ||| | || || Sbjct 4601777 GTCCCGAGCCTTCCTGGACAACCTGGGCTTCACCGACCGAGAGGAGGGGGACCTCGGGCC 4601836 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || |||||||||||||||||||||||||| || ||||| Sbjct 4601837 CGTTTACGGGTTCCAGTGGAGACACTTTGGTGCAGAGTA 4601875 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||||||||||||||||||||| || || || | ||| |||||||| Sbjct 4601875 TACTCTGCACCAAAGTGTCTCCACTGGAACCCGTAAACGGGCCCGAGGTCCCCCTCCTCT 4601816 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | ||| ||| | |||||||| ||| |||| ||||||| ||||||||||||||| Sbjct 4601815 CGGTCGGTGAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCGTCCCAGATCTTC 4601756 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGccccc 7057 || || ||| |||||||||| || || | |||| Sbjct 4601755 ACGCCTTTCTCCGACAGCTCCTTGGCATTTGTCGACCCC 4601717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 34470 CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATG 34529 |||||||||| | ||||||||||||| | |||||||||||| | ||| |||||| || | Sbjct 4602522 CGGGACAGGGTGTGGACCAGCTGCAGAAAGTGATCGACACCATCAAGAAGAACCCAGAGG 4602581 Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || | ||||| | ||||| || |||||||| || Sbjct 4602582 ACCGGCGGATCATCATGTGTGCATGGAACCCCAA 4602615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||||| | ||| || |||||| ||| | ||||||| Sbjct 4602615 TTGGGGTTCCATGCACACATGATGATCCGCCGGTCCTCTGGGTTCTTCTTGATGGTGTCG 4602556 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCG 6875 ||||| | ||||||||||||| | |||||||||| Sbjct 4602555 ATCACTTTCTGCAGCTGGTCCACACCCTGTCCCG 4602522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448245181120560