Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23 138 3e-27 seq3073 104 6e-17 >seq23 Length=4589928 Score = 138 bits (152), Expect = 3e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||||||||| |||| ||||| |||| || || | ||||| Sbjct 3279566 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 3279507 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || ||||||||||| Sbjct 3279506 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 3279447 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 3279446 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 3279387 Query 225681 CTTGCCCGT 225689 ||| || || Sbjct 3279386 CTTCCCAGT 3279378 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| || || || | || || | ||||| Sbjct 3279338 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATC 3279279 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 3279278 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3279219 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| | |||||| || | ||||| || Sbjct 3279218 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGTTCCACCTCAAGGGTGATGGT 3279159 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || || | ||||| | || | ||||| || Sbjct 3279158 CTTCCCAGTGAGGGTTTTGACAAAGATCTGCATGTT 3279123 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || || || |||| ||||| || | || || | ||||| Sbjct 3277374 CAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 3277315 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || || |||||||| Sbjct 3277314 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3277255 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 3277254 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 3277195 Query 225681 CTTGCCCGT 225689 ||| || || Sbjct 3277194 CTTCCCAGT 3277186 >seq3073 Length=17329 Score = 104 bits (114), Expect = 6e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| | || ||||| || ||||| || || || ||| | ||||| Sbjct 6378 CCAAATTTATAATGTTATTGTAACAGCGCACGCTTTTGTAATAATCTTTTTTATAGTTAT 6437 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || || || || ||| |||| ||| |||| ||||| || ||||| Sbjct 6438 ACCCATCATAATCGGGGGCTTTGGTAACTGACTCGTACCTCTAATAATTGGGGCCCCTGA 6497 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || || | | ||||| |||||||||||| | || || || || || |||| Sbjct 6498 CATAGCCTTCCCCCGTATAAACAACATAAGTTTTTGACTTCTCCCTCCCTCTTTCCTTCT 6557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192484246692662